UFO11889.5prime Sequence
1127 bp (1011 high quality bases) assembled on 2012-06-29
> UFO11889.5prime
CAGTCGACATGTCCATTAGCCTCTCTGAATTCTACCAATCCTCACTGACT
TTCTGGAGCCATCTGATCCATATACTGCTGCAGTTCATCCAGACCAACTG
CTGGAATCACATCACACAGAAGGAGCAGCAGCAAGAGGAACTCAACGAAC
CCTGTGCCATCTCAAAAACCATGGACGCCTTCGTGGAGGAGCAGCAAAAG
CGGGTGCAACGAAAATCCCACGAGTACGCCAAAGTGGAGCTACTGCATCG
CCTGCTTGTCCAGCAGCAACTGCAGGAACTGGAGCAGCGCCGACTCATCC
GATTGGCTCTGGCCAGGAGGCGACTGGACTACTCCAATGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG
GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC
GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCAC
CGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCG
TCGTGCTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGAAA
ACGTGTACAGGTGAACACTTTCCCATATCACAGCTCACGTCTTTCATTGC
CATACGAAATTCCGATGACATCATCAGCGGCAGAATGGTGAATAAGCGAT
AAACTTGTGCTATTTTTCTTTACCGTCCTTAAAAGCGTATAATCCAGCCG
ACGTTGTAAGGTAACATGGAACACTGA
UFO11889.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13000-RA | 508 | CG13000-RA | 27..361 | 4..338 | 1675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16948111..16948445 | 338..4 | 1675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:47:10 has no hits.
UFO11889.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:34 Download gff for
UFO11889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13000-RA | 1..333 | 9..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:32 Download gff for
UFO11889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13000-RA | 24..361 | 1..338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:24 Download gff for
UFO11889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13000-RA | 24..361 | 1..338 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:24 Download gff for
UFO11889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16948111..16948448 | 1..338 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:32 Download gff for
UFO11889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16842144..16842481 | 1..338 | 99 | | Minus |
