UFO11890.5prime Sequence
1112 bp (1016 high quality bases) assembled on 2012-06-29
> UFO11890.5prime
CAGTCGACATGCCTTCCGTCGAGTGGGTCTGTGGTTTGCTCTACTACGTT
ATGCGCACCTACATAAAGGTATTCGTATCCAGTTGCGAAGCACACTTCCC
TATCGATATCCTTGACAAGATTGTGTATTTGATAGATTTCGCCGAAGTTT
CCATGAAGATAATGCGCCGGCCAAGAAATTACACGAATCCGACTGAGCGC
CAAGCGAGACGCCTTCAATTCTACAATTTCCTTTTAAAGTTAAGATTTTT
GGCACAGGTGATCTACACCTTGGTAGCCGTGGTAATTGGGACACTTAAAA
CAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAG
GGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATA
GGCCAGGGTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAA
ACTGCCGGAAATCGTCGTGTATCACTCCAGAGCGATGAAAACGTTTCAGT
TTGCTCATGGAAACGGTGTAACAGGGTGACACTATCCATATCACAGCTCA
CGTCTTTCATGCATACGAATTCCGGATGACATCATCAGGCGGCAGATGTG
ATAAAGGCCCGATAACTGTGCTATTTTCTTTACGTCTTAAAAGCGTAAAA
TCAGCTGACGTCTGATTAGTTACTGGACACTGACTGATGGCCTTAGTTCT
TACGATGCCATG
UFO11890.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42766-RB | 732 | CG42766-RB | 111..409 | 4..302 | 1480 | 99.7 | Plus |
| CG42766-RA | 626 | CG42766-RA | 111..388 | 4..281 | 1375 | 99.6 | Plus |
| CG43076-RA | 771 | CG43076-RA | 110..372 | 19..281 | 325 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15977153..15977337 | 118..302 | 925 | 100 | Plus |
| X | 23542271 | X | 15976978..15977093 | 4..119 | 565 | 99.1 | Plus |
| X | 23542271 | X | 15223143..15223286 | 287..144 | 210 | 76.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:47:13 has no hits.
UFO11890.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:35 Download gff for
UFO11890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42766-RB | 107..412 | 1..306 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:34 Download gff for
UFO11890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42766-RB | 107..418 | 1..311 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:27 Download gff for
UFO11890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42766-RB | 107..418 | 1..311 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:27 Download gff for
UFO11890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15976974..15977093 | 1..119 | 97 | -> | Plus |
| X | 15977155..15977337 | 120..302 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:34 Download gff for
UFO11890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15871007..15871126 | 1..119 | 97 | -> | Plus |
| arm_X | 15871188..15871370 | 120..302 | 100 | == | Plus |
