UFO11892.5prime Sequence
1124 bp (1013 high quality bases) assembled on 2012-06-29
> UFO11892.5prime
CAGTCGACATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGGGCGTGGTC
CTGGAGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGAAAGAGGGG
GCTCGCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCTTAGGATGC
GCTCGAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGCTGCTCATC
TACTTGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGCGGCAGCAA
CCACGTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGAGTGCGACG
TGATCCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGTGGGATCCA
TGCAAATGTTGCCGCATATGCGCCAAAACTTTGGGCGAATCCTGCGGCGG
TCCGGGCGGATTTTCCGGTCAATGTGAGCCGCCCCTGCAGTGTGTGACCA
AGCTGCCCATTAGCAGCGGATTGGGCGTGTGCATGGATTTGCAGCACCTG
ACCGCCCTGACCTACAGTCAGCACGATAATTGTTCCGACAGCGATTCGAT
TGTTTTGGAGCCGGGCTGCGAGATCACCAACAAACGCTGCCAGTGCTGGC
CAACTATGCGCACCTGTCTCAGCGAACTGACCAGCGATGGGGGATCCCCC
GACGACTCTCGCTGGCACTTCAAGAACCTAGAGGACTGCCAGTTGAATCT
ACAAAATCTAATAAAACTCGAACAGGAATTCGATGAAGACTACAAAATCT
CACCGAGCAAATTCACATACAAAAAACTACGCAGAAAGCGAAAATCTTTA
AAGAAACGAATCATCATCTTGAAAGATGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTGATTCTC
ACAATAAAAAACCGCCCGGCGGCAACCGAGCGTCTGAACAAATCCCAGAT
GGAGTTCTGAAGGTCCTTACTGATCTATCAACAGAGTTCCAAGGCGAGCC
TCGAATATCAAATTACGCCCCGCCTGCCACTCATCGCAGTACGTGTATCA
TAAAGCATCTTGCGACTGAAGCAT
UFO11892.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cmpy-RD | 1638 | CG13253-RD | 373..1191 | 9..827 | 4080 | 99.9 | Plus |
| cmpy-RC | 1622 | CG13253-RC | 357..1175 | 9..827 | 4080 | 99.9 | Plus |
| cmpy-RB | 2737 | CG13253-RB | 1815..2290 | 352..827 | 2350 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20716799..20717145 | 355..9 | 1735 | 100 | Minus |
| 3L | 28110227 | 3L | 20713680..20713878 | 684..486 | 995 | 100 | Minus |
| 3L | 28110227 | 3L | 20715553..20715687 | 486..352 | 660 | 99.3 | Minus |
| 3L | 28110227 | 3L | 20713484..20713613 | 811..682 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:47:19 has no hits.
UFO11892.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:36 Download gff for
UFO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13253-RC | 355..1178 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:38 Download gff for
UFO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cmpy-RC | 357..1180 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:31 Download gff for
UFO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cmpy-RC | 357..1180 | 9..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:31 Download gff for
UFO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20713478..20713611 | 684..819 | 97 | <- | Minus |
| 3L | 20713681..20713877 | 487..683 | 100 | <- | Minus |
| 3L | 20715553..20715683 | 356..486 | 100 | <- | Minus |
| 3L | 20716799..20717145 | 9..355 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:38 Download gff for
UFO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20706578..20706711 | 684..819 | 97 | <- | Minus |
| arm_3L | 20706781..20706977 | 487..683 | 100 | <- | Minus |
| arm_3L | 20708653..20708783 | 356..486 | 100 | <- | Minus |
| arm_3L | 20709899..20710245 | 9..355 | 100 | | Minus |
