UFO11893.5prime Sequence
1105 bp (984 high quality bases) assembled on 2012-06-29
> UFO11893.5prime
CAGTCGACATGAATTGGCGTAGTTTTATTGTTACTTTAATAAACTGCATA
GTCTGGTCAATACAAGTTATTCAATTAAATGGTACTGGAATTAAAAACCT
AGGAAGAACAAGAGACTCTTTTAGAGCGGTACAAGTACCCCAACAGTTTT
ATGATGCTATCGAACAGTCAGATTTCAGTAAACATAGTTTACAAAATAAG
TTAGAGCATTTCCTTGAAAAACTTCAAAAAAACTTGACCATATCGGCAGT
ATTGAGTGACTCCGAAGATATTGTCACAAGTGAAAGAAACTATGTTTACA
AGATGCGAGAACTATCAACCTTCTTTTATGAAGCTTCTTTTTCTTTCGAA
CAATTTTCTTCTGATATCCAAACTTTTTATGAAACATCAAAAAATGCAAG
CTACGCACTTTTGTTTAAACTACGCCAAGTCCCAACAGGTCAACCAACTC
TAGTAAAGGCTTTACTCACAAACTATTTTGCGGAAATAGAATTCTTTCAT
GTGTTGTTTTCAGAAATTATCGATGATGCTATGGAATATAGTACTAAATC
CCTAAAATGGATTCAAGAACTATTTGTTTATTATGCTGATACTCAAAATA
ATATTCTAGAAAATTGGAAATTGAAGACAAATCTTGAATGCTGCAAACTT
TATGTCAACTTCTTACAGGATCAGTCCTCTCAGATTTTTAAATGCGCTAC
TGTGGATAATCTTAATATAATATACGATGTGTATTCCGTAACGAAGCTTA
ACATAAAATATATACTAAAGCAACTTGAGTTTCGCATCCAACGATTATTC
AATTGTTTATTGTATAACAGCCCTAACATACAATGTAAGCTTCTTAAAAG
AGCAGAGAAAGATCTTAAAACCTTATTTAGAAATCTCTCCGAGCTAGACA
TGTTCATCGATATAAAAACTAAAAAGCAAAGCAGCCGCATTAGATTTCGT
CGAGAAACACATGACAGCATCAAATTAAATTGACGACAGACTACTGCTCT
ATTGCCTTTCAATACTCAATGTTCACAGATCTAAAAGATGCTTTTACTTT
TAGATATATATGGCAGCCTTCTAGACCATCGTGGCGCGGCCAGGTAGGCT
AATCT
UFO11893.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40298-RA | 1161 | CG40298-RA | 39..1107 | 9..1056 | 4805 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23726867..23727815 | 9..954 | 4615 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:47:22 has no hits.
UFO11893.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:37 Download gff for
UFO11893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40298-RA | 1..936 | 9..942 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:40 Download gff for
UFO11893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40298-RA | 33..974 | 3..942 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:32 Download gff for
UFO11893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40298-RA | 33..974 | 3..942 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:32 Download gff for
UFO11893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23726861..23727802 | 3..942 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:40 Download gff for
UFO11893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23719961..23720902 | 3..942 | 99 | == | Plus |
