UFO11895.5prime Sequence
1141 bp (1009 high quality bases) assembled on 2012-06-29
> UFO11895.5prime
CAGTCGACATGGAGAACAAAAAATGATATAAAAGAAATGGACCTGGGCCT
ATCTCGAGCAGATATGTTGGAACAGCTCGAAAAAAGGCGAATATTTCTGG
GCGATGGCAAGGATATGCCGCTGGATCGTCTGGAGGATATCTACCGCAAT
TACATAGTTCCCAAGCCAAAAAGAGAGCGCAAGCCGCGCAATCCAAGTCC
CGATCCCAATTTCAATCCCATTGAAATAGAGCAGCTAGCGGAGCGCATCA
AGTCGGTTGTCATAGTGGGACAGAAACGAGCGCATGCAGAGAATAAGAGC
GACGACCAGGCCAAGCAAATCAAGATGGACCTGGACGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCG
TAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTC
GTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGAAAACG
GTGTAACAAGGGTGAACACTATCCCATATCACAGCTCACGTCTTTCATTG
CATACGAAATTCAGATGAGCATTCATCAGGCGGCAAGAATGGTGAATAAC
GCGATAAAACCTTGGTGCTTATTTTTCTTACCGTCTTAAAAGGCGTATAT
ATCAGCTGAACGGTCTGGTTTATAGGTTCACATTGTAGACA
UFO11895.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42512-RB | 617 | CG42512-RB | 81..407 | 9..336 | 1615 | 99.7 | Plus |
| CG42512-RA | 1782 | CG42512-RA | 81..407 | 9..336 | 1615 | 99.7 | Plus |
| CG32573-RA | 1782 | CG32573-RA | 81..407 | 9..336 | 1615 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16651587..16651838 | 85..336 | 1260 | 100 | Plus |
| X | 23542271 | X | 16651465..16651530 | 19..84 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:31:09 has no hits.
UFO11895.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:31 Download gff for
UFO11895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-RA | 81..413 | 9..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:38 Download gff for
UFO11895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-RA | 81..413 | 9..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:00:25 Download gff for
UFO11895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-RA | 81..413 | 9..343 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 04:00:25 Download gff for
UFO11895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16651587..16651838 | 85..336 | 100 | == | Plus |
| X | 16651456..16651530 | 9..84 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:38 Download gff for
UFO11895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16545489..16545563 | 9..84 | 98 | -> | Plus |
| arm_X | 16545620..16545871 | 85..336 | 100 | == | Plus |
