UFO11901.5prime Sequence
1149 bp (1052 high quality bases) assembled on 2012-06-29
> UFO11901.5prime
AACTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAA
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCAGACACAG
ACACACACCACCACAGACCGACATGGCTATAGCCTGCGCTTTTCGCCTTT
CGAGGCTAACTACTTGCTGCTAGCTACAAGCCAACTGTACGGTCTTGCTG
GAGGTGGTTCCCTCTTTCTGCTGGAACAGAACTCCAACACAAATTCCTCA
TCCACAGATGGCCAGAGTCTCGGAGAGCTGTGCCGCCTAGAGTGGTCCGA
TGGATTGTTCGACGTCGCCTGGTGTCCGTATGCCGCCGATATCGCCGCCA
CTGCCTCCGGAGATGGATCGCTTCAGATCTGGTGCGGATTGGATGGCGAA
TCGGCGAGCAACCAGCTGACGCCGAAACAGCCGCTGATCTGCCTGCAGGA
GCACAAGAACGAGGTGTACAGCCTGGACTGGGGCGAGAAGTGGAACTACC
ACACGCTGCTCTCGGGCAGCTGGGATTGTACACTGAAATTGTGGGACTGC
AACAGACAGAACTCCATCACCACATTTGTGGGCCACAACGATCTGATCTA
CGGGGCCAAGTTCTCGCCCCTGATCGCCAATCTGTTTGCAAGCGTAAGTA
CCGATGGACATCTTAACTTATGGAACTCTCTTGACTTTGCAGGTAAACCC
CTGATGAGCATCGAGGCGCATGCGAGTGAGGCACTATGCTGCGACTGGTC
GCACTTCGATCGCAATGTCCTGGGTCACTGGAGGTTCGGACGGTCTGATC
CGCGGCTGGGATCTGCGCAAGATGAGGACGCACGTCTTTGAGCTGTACTC
TGGAGAATTCGCTGTCCGGCGATTGGCCTGTTCACCGCACTCGGCAGCGG
TCTTGGCATCGGCCAATTATGATTTTACCACAAGGATTTGGAATCTGGAG
CGTGTGAGTCCGCCCAGGAGGTCAATGCGCGGCACACGGAGTCGTGGTGC
GGATTGGATGGATCCCCACAGGACCCATCAGTGGCGACTGGTGGCTGGGA
CTCGTGGCACGTTATACCCGCATGTCTGACGGGTGATAGGTCGTCGCAGC
CTTCTAGACATCGTGGGCGCGCGGGCCAGTATTGTCTAGTAATCTAAAT
UFO11901.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex7-RB | 1391 | CG6486-RB | 77..1093 | 89..1095 | 4665 | 98.1 | Plus |
| Pex7-RA | 1443 | CG6486-RA | 129..1145 | 89..1095 | 4665 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8649705..8650460 | 179..935 | 3735 | 99.9 | Plus |
| 3L | 28110227 | 3L | 8649547..8649638 | 89..180 | 460 | 100 | Plus |
| 3L | 28110227 | 3L | 8650540..8650642 | 933..1032 | 325 | 92.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:47:37 has no hits.
UFO11901.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:40 Download gff for
UFO11901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6486-RB | 77..1068 | 89..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:50 Download gff for
UFO11901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex7-RA | 129..1120 | 89..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:41 Download gff for
UFO11901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex7-RA | 129..1120 | 89..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:41 Download gff for
UFO11901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8649547..8649638 | 89..180 | 100 | -> | Plus |
| 3L | 8649707..8650459 | 181..934 | 99 | -> | Plus |
| 3L | 8650542..8650688 | 935..1072 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:50 Download gff for
UFO11901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8642647..8642738 | 89..180 | 100 | -> | Plus |
| arm_3L | 8642807..8643559 | 181..934 | 99 | -> | Plus |
| arm_3L | 8643642..8643788 | 935..1072 | 91 | | Plus |
