Clone UFO11902 Report

Search the DGRC for UFO11902

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:119
Well:2
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptNC2alpha-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11902.5prime Sequence

393 bp (294 high quality bases) assembled on 2012-06-29

> UFO11902.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCATCGAAAAAG
AAAAAATACAACGCACGCTTTCCGGCGGGTCGCATCAAGAAGATCATGCA
AAGCGACGAGGAAATCGGGAAGGTGGCCCAGGCGGTGCCTGTTATCATCT
CACGCACGCTGGAGCTCTTCGTGGAGTCGCTGCTGACCAAGACGCTGCGC
ATCACGAATGCGCGCAACGCCAAGACGCTATCGCCATCGCACATGGAGGC
AGTGTATCGTATCCCGAGAAACGCTTTGACTTTCCTCCAGGGAGCTGGTC
CGCAACATACCCGACATCATGGTGGCCGAGGAGGCCGCCTACA

UFO11902.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
NC2alpha-RA 1235 CG10318-RA 96..399 86..393 1395 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21670495..21670757 127..393 1095 96.6 Plus
2R 25286936 2R 21670247..21670289 86..128 215 100 Plus
Blast to na_te.dros performed on 2014-11-28 17:47:40 has no hits.

UFO11902.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:40 Download gff for UFO11902.5prime
Subject Subject Range Query Range Percent Splice Strand
NC2alpha-RA 80..382 86..392 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:52 Download gff for UFO11902.5prime
Subject Subject Range Query Range Percent Splice Strand
NC2alpha-RA 96..398 86..392 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:42 Download gff for UFO11902.5prime
Subject Subject Range Query Range Percent Splice Strand
NC2alpha-RA 96..398 86..392 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:42 Download gff for UFO11902.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21670247..21670288 86..127 100 -> Plus
2R 21670496..21670756 128..392 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:52 Download gff for UFO11902.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17557752..17557793 86..127 100 -> Plus
arm_2R 17558001..17558261 128..392 97   Plus