UFO11904.5prime Sequence
1096 bp (987 high quality bases) assembled on 2012-06-29
> UFO11904.5prime
CAGTCGACATGGAGGTGGAATTCAGTAGGGAGAACTTCCTGCTGCCGGAG
ATGAAGTACGAGTACCTGGATCACACGGCGGATGTTCAAATCCACGGATG
GGGATCGTCGCTGAAAGAGGCGTTCGAACAGTGCGGAGTGGCCATGTTTG
GATATATGACCGAACTGGATTACGTGTCCGTGGAGCAGTGCTTTGAAATC
GAAGCGCATGGAGATGATCTGGAGAGCTTACTCTTTCACTTTCTGGACGA
GCTGCTGTTCCTGTTCTCTGCCGAACCGTATCTGGTGTGCAAGAAGCTGG
AGATCACCAAGTTCGATGTGGAAAACTTCGAGATTTCCTGCCATTGTTAC
GGGGAACCATTTGAGCTGGGGAAACATCCGCAGGGCACCGAAGTGAAGGC
AATCACATACTCGGCCATGCAAATCATTCAGGACGTGGAGGCCAGCAACT
ACGAGGTGTTCGTGATAATTGACATTGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTG
CCCATGGTGAAAACGGGGGCGAAAAAGTTGTCCATATTGGCCACGTTTAA
ATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAAACGAAAAAACAAA
TTCTCAATAAACCTTTAAGGGAAAATAGGCCAGGTTTTCACGGTAACCCG
CCACATCTGGCAAAGGTGGTAGAAACTGCCGGAATCGTCTGGCTCACTCG
AAGCGAATGAAACGTTCAGTTGCTCATGAACCGGTGTAACAGGTGT
UFO11904.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6353-RA | 1222 | CG6353-RA | 109..576 | 9..476 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21661832..21662219 | 476..89 | 1940 | 100 | Minus |
| 3R | 32079331 | 3R | 21662810..21662864 | 63..9 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:47:47 has no hits.
UFO11904.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:42 Download gff for
UFO11904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6353-RA | 90..562 | 1..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:56 Download gff for
UFO11904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6353-RA | 104..576 | 1..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:45 Download gff for
UFO11904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6353-RA | 104..576 | 1..476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:45 Download gff for
UFO11904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21661832..21662219 | 89..476 | 100 | <- | Minus |
| 3R | 21662719..21662743 | 64..88 | 100 | <- | Minus |
| 3R | 21662810..21662869 | 1..63 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:56 Download gff for
UFO11904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17487554..17487941 | 89..476 | 100 | <- | Minus |
| arm_3R | 17488441..17488465 | 64..88 | 100 | <- | Minus |
| arm_3R | 17488532..17488591 | 1..63 | 93 | | Minus |
