UFO11905.5prime Sequence
1142 bp (1044 high quality bases) assembled on 2012-06-29
> UFO11905.5prime
GGAATTGGCCCATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGC
ATACATTATACGAAGTTATCAGTCGACATGCGTGGACTAGTGTTACTGGT
GGGACTGATCTTCTTACTGGCTCAGGGATCCCTTGCCTCGGATTACTTTT
CATCCATTACGGGCCTGGAGGATCTCTTGCATACGGAGCAGTATCTTACA
AGGGAACTGAGGTCAAAGGTTAATGCAATCCAAACTGCACTACAACAGCT
CGAGAGCGAGCTATCCTCCATCGAAAAGGAGCACACCATGGCCGCGTCGG
ACACGGAGAACTACCTGACCAACCCGGTGAATGTGTACCGCCTGATGAAG
CGCCTTCACACGGACTGGTCTCTGATGGAGGGACGAGTGCAGCTTATGGC
TGAGGAGATGAATTTCAATGCTACCAGGGAGTACGGCCTGAGCTACCCCA
GCCAGGAGGACGTGGAGGGGGCTGCTCTGGCTCTCGTCCGCCTGCAGAGC
ACCTACAAACTGGACGTGGCCCAGGTGGCCCAGGGCATTCTGAATGGCGT
CAAATACGGCTCCGATATGAGCTGGCAGGATTGCTTCGAGCTGGGTCAAC
AACTCTTTGAAATGGAGGACTACAACAACACCAAGGTCTGGCTGCGGGAA
TCGATGGAACGCTTGCGACGTCAGACCAGCCACGCCCCCAGCCACCTAGC
GCCCACTAGCGGACCGGATACGGTTACCCTCAACAAAATGGAGGCGACGG
CCAAGAGTTTGTTCCAATTGGGCGATTTCGACACTGCTTTCGAGCTGAGC
CAGCGAGTCCTTCAGTTCGATCCCAAACGCATAAATGAACTGGCATCTCG
GTGACAAGGGAACGGCGCCTCCGGAGGACATCGATGATGTGTATCTACCA
AAGCACTCGGACTCCTACAGCCTATCGCAGAGTTCGCCAAATACGAAAAG
TGTGCCGAGGAGAGGTGCATCCAATTGTCCGCCAGGAGTTGCGTGTCGCT
ATAGCCGGGAACCATCCGTATTCGCTTTCTGCGCACTGAGCTGAGAGCAC
AGCTGATCCTTATGTGCAACTTCATGATATACTGATTCCGAAGATCTCGC
AGCTCGGGAAATGCTGTTCGGCCATTGCATCGCTCCAGTGGA
UFO11905.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaNE1-RA | 1737 | CG9728-RA | 105..1182 | 78..1137 | 4765 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30498094..30498307 | 772..559 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 30500044..30500222 | 256..78 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 30499036..30499192 | 411..255 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 30498830..30498977 | 559..412 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 30497873..30498022 | 921..771 | 690 | 98.7 | Minus |
| 3R | 32079331 | 3R | 30497712..30497807 | 1021..930 | 315 | 95.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:47:50 has no hits.
UFO11905.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:42 Download gff for
UFO11905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE1-RA | 1..1081 | 78..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:59 Download gff for
UFO11905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE1-RA | 99..1185 | 70..1141 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:46 Download gff for
UFO11905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE1-RA | 99..1185 | 70..1141 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:46 Download gff for
UFO11905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30497873..30498021 | 772..921 | 98 | <- | Minus |
| 3R | 30498095..30498306 | 560..771 | 100 | <- | Minus |
| 3R | 30498830..30498977 | 412..559 | 100 | <- | Minus |
| 3R | 30499036..30499190 | 257..411 | 100 | <- | Minus |
| 3R | 30500044..30500228 | 70..256 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:59 Download gff for
UFO11905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26323817..26324028 | 560..771 | 100 | <- | Minus |
| arm_3R | 26324552..26324699 | 412..559 | 100 | <- | Minus |
| arm_3R | 26323595..26323743 | 772..921 | 98 | <- | Minus |
| arm_3R | 26324758..26324912 | 257..411 | 100 | <- | Minus |
| arm_3R | 26325766..26325950 | 70..256 | 97 | | Minus |
