UFO11909.5prime Sequence
1183 bp (1088 high quality bases) assembled on 2012-06-29
> UFO11909.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGATTTGTGTAGCGGGCG
TGAGGCTCCAGCTGCCAACAGCTCCGCCCACCTACAGCATTTATAGCTCC
ATCTTTCCGCTGAGACGAGGTCGTGGACTGACTGGACTGAAGAATCTGGG
CAACACCTGCTATATGAACAGCATACTGCAGTGCCTGAGCAACACGCCTC
AGTTGACCGAGTACTGCATTTCGGACAAATACAAGAATTACATCAGCAGA
AGCAACAAGACTAATGGCCAGGTGATCGAAGAGGTGGCTGCACTCATCAA
GGAGCTCTGGAATGGACAGTACAAGTGTGTGGCCAGCCGAGATTTGAGGT
ACGTTGTGGGCCAGTACCAGAAGATCTTCCGCGGCGTTGACCAGCAGGAC
TCACACGAATTCCTCACCATCCTGATGGACTGGCTGCACTCGGATCTCCA
GACCCTACATGTGCCCCGTCAGCGGGAGATGATCAGTGCGTCGGAAAAGG
CTTGGCTGGAATTTACCAAGGCGAAGGAGAGCATGATTCTGCATTTATTC
TATGGCCAAATGAAGAGCACTGTGAAATGTGTGGCCTGCCACAAGGAGTC
CGCCACGTACGAGAGTTTTTCTAATCTCAGCCTGGAGCTGCCGCCAAACT
CGAATGTATGTCAGCTGAACCAGTGCATGGACATGTACTTCAGTGGAGAA
AGGATCCATGGCTGGAATTGTCCTAGTTGTAAAACGAAAAGAGATGCCAT
CAAGAAGCTGGATATATCGAAGCTGCCACCTGTGCTGGTGGTGCATCTTA
AGCGCTTCTATGCGGATCCCAGTAACTCTGGCTCGTACATGAAGAAGCAG
ACTACTTGCGCTTCCCGCTCGAGACTTGGACATGAATCCCTACATAGCAC
GGGCGGATCGCGGGCGGTAACACCTAAGACCTACCAGCTGTACGCGTATC
CATCACTACGGCACCATGGAAGGCGGGCACTACACGCATTTTGCAGAGCG
CAACTACGGAAATGGTTCAGTCGACGATCAGTCGTCTCGGCGTTTGACTC
CTCTAACGTTGATTTCTAGCCCTGCCATACATTCCTTTTTCTAACCTGGC
GGCCACGCAATGCCAGGTGCCCTTGGCAGCTTC
UFO11909.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubpy-RB | 1546 | CG5798-RB | 79..1175 | 82..1171 | 4975 | 97.8 | Plus |
| Ubpy-RA | 3204 | CG5798-RA | 1824..2833 | 169..1171 | 4540 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21137008..21137463 | 399..854 | 2280 | 100 | Plus |
| 3R | 32079331 | 3R | 21136715..21136945 | 169..399 | 1155 | 100 | Plus |
| 3R | 32079331 | 3R | 21137519..21137786 | 854..1109 | 745 | 94.8 | Plus |
| 3R | 32079331 | 3R | 21136560..21136647 | 82..169 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:47:59 has no hits.
UFO11909.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:44 Download gff for
UFO11909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubpy-RB | 72..1168 | 73..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:06 Download gff for
UFO11909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubpy-RB | 72..1168 | 73..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:52 Download gff for
UFO11909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubpy-RB | 72..1168 | 73..1163 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:52 Download gff for
UFO11909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21136553..21136646 | 73..168 | 96 | -> | Plus |
| 3R | 21136715..21136945 | 169..399 | 100 | -> | Plus |
| 3R | 21137009..21137463 | 400..854 | 100 | -> | Plus |
| 3R | 21137520..21137836 | 855..1163 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:06 Download gff for
UFO11909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16962275..16962368 | 73..168 | 96 | -> | Plus |
| arm_3R | 16962437..16962667 | 169..399 | 100 | -> | Plus |
| arm_3R | 16962731..16963185 | 400..854 | 100 | -> | Plus |
| arm_3R | 16963242..16963558 | 855..1163 | 92 | | Plus |
