UFO11912.5prime Sequence
1174 bp (1019 high quality bases) assembled on 2012-06-29
> UFO11912.5prime
GAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGCAT
ACATTATACGAAGTTATCAGTCGACATGGATGCCGAGGCGCCAAATCAAC
TAGAGAAAAATCAGACAGCGACAGTTCCGAGACAGGAAACTGCGGAGGGA
GGATCGACAGGTGAAACGGCAGTTGGAGGTGCAGCAGCCAAGGTCACGAA
GGAACAGGATCACGATGCGGAGTATCATCCGCCTACAAGCTATCTGGAGA
CCATCGTGCACCTATTCAAGGGCAACATTGGGCCTGGTCTGTTCGCCATG
GGAGATGCCTTCAAGAACGGAGGTCTCCTGGTGGCGCCACTTCTGACTGT
TGTCATAGCAGTGGTGTCCATCCACTGCCAACATGTCCTAGTGACCTGCT
CCAAGAAGATGCGCGATCTTAAGGGCGATAGCGTATGTGCGGACTATGCC
CAGACAGTGGAACAGTGCTTCGAGAATGGTCCATCAAAGCTGAGGGGCTG
GTCCCGAACGATGGGGCGACTGGTGGACATATTCATTTGTGTGACCCAGT
TGGGCTTCTGTTGCATTTACTTTGTATTCATTAGCACGAATCTGAAGCAG
ATCCTGCAAGCCTACGATATCGACATGAACGTTCATCTAGTGATGCTGCT
GGCCTTCGTACCCGTTCTCCTCAGTTCACTAATCACGAACCTTAAGTGGC
TGACTCCTGTCTCTATGTTCGCCAATGTTTGCATGATCCTGGGACTGGCC
ATAACGTTGTACTATGCCCTCAAGGACGGACTGCCGGAGGTTGAGGAACG
CGCCCTCTGGACGAATGGCTCCCAGCTGGCTCTCTTCTTCGGCACCGCCA
TCTTTGCCTTCGAAGGCATTGCCTTAGTGATGCCGTTGAGACGCCATGCG
AAAGCCACACCAGTTCGAGCGACCCTTGGGTGTGCTCATGTGGGCATGTC
TCGTCTCGTCATGTCATGTCGCCGATCAGTGGGCTATATGAGTGGGCGGC
AGTCGAGAGTTGACCTCATCTGGTGAACTACTGCCAGCGTCACTGATGTT
CGCTGATACTCCGTACCTCGCGTTCTCTGCATCGATATGGCATGCACATG
CGATCAGCATCCGCTGATCGGTCGATCGGCTGGACTGCTCGAGTTCGCTG
ACCATCGAGCATGCACGTGCTGTC
UFO11912.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16700-RA | 2433 | CG16700-RA | 265..1197 | 74..996 | 4425 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17096281..17096645 | 236..600 | 1825 | 100 | Plus |
| X | 23542271 | X | 17096715..17097068 | 599..949 | 1640 | 98.9 | Plus |
| X | 23542271 | X | 17095411..17095568 | 86..243 | 775 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:47:33 has no hits.
UFO11912.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:39 Download gff for
UFO11912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16700-RA | 260..1212 | 68..1009 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:47 Download gff for
UFO11912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16700-RA | 260..1212 | 68..1009 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:38 Download gff for
UFO11912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16700-RA | 260..1212 | 68..1009 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:38 Download gff for
UFO11912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17095413..17095564 | 88..239 | 100 | -> | Plus |
| X | 17096285..17096645 | 240..600 | 100 | -> | Plus |
| X | 17096717..17097137 | 601..1009 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:47 Download gff for
UFO11912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16990750..16991170 | 601..1009 | 96 | | Plus |
| arm_X | 16989446..16989597 | 88..239 | 100 | -> | Plus |
| arm_X | 16990318..16990678 | 240..600 | 100 | -> | Plus |
