UFO11914.5prime Sequence
1120 bp (1013 high quality bases) assembled on 2012-06-29
> UFO11914.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACGCCATCAA
GAAGAAGATGCAAGCGATGAAGCTTGAGAAGGATAACGCCATTGACAAGG
CCGACACCTGCGAGAACCAAGCCAAGGATGCCAACTCCCGCGCCGACAAA
CTGAACGAGGAGGTGCGCGATCTGGAGAAGAAGTTCGTCCAGGTGGAGAT
CGATCTGGTTACCGCCAAGGAGCAGCTGGAGAAGGCCAACACCGAGCTGG
AGGAGAAGGAGAAACTCCTGACCGCCACCGAGTCCGAGGTGGCCACCCAG
AACCGCAAGGTGCAACAGATTGAGGAGGATCTGGAGAAGTCCGAGGAGCG
CTCGACCACCGCCCAACAGAAGCTGCTGGAGGCCACCCAGTCGGCCGATG
AGAACAACCGCATGTGCAAGGTGCTGGAGAACCGTTCCCAGCAGGATGAG
GAGCGCATGGACCAGCTGACCAACCAGTTGAAGGAGGCCCGCATGCTGGC
TGAGGATGCCGATACCAAGTCCGACGAGGTCTCCCGCAAGCTGGCCTTCG
TTGAAGACGAGCTGGAGGTGGCTGAGGATCGTGTCCGCTCCGGCGAGTCC
AAGATCATGGAGCTGGAGGAGGAGCTGAAGGTTGTCGGCAACTCCCTGAA
GTCCCTGGAGGTGTCCGAGGAGAAAGCCAACCAGCGCGTGGAGGAGTTCA
AGCGCGAGATGAAGACCCTGTCCATCAAGTTGAAAGGAGGCCGAGCAGCG
CGCCGAGCACGCCGAGAAGCAAGTGAAGCGCCTGCAGAAGGGGTCGACAG
GCTAGAGGACCGTCTCTTCAATGAGAAGGAAAATACAAAGCAATCTGCGA
CGATTTGGACCAGACATTTGCCGAACTTACTGGATATGCAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAGTGTCATAATCATAATCATATC
ATATCATAATCACACTAGGCTAGAGATCTGTCATGACTGTGCTGATCTCA
CATAAAAACGCCCGGCGCAACGACGTCTGAACAAATTCAGAATGGAGTCC
GAAGTCATACTGAATCTATT
UFO11914.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm2-RC | 1980 | CG4843-RC | 108..960 | 86..937 | 4180 | 99.5 | Plus |
| Tm2-RG | 1145 | CG4843-RG | 77..851 | 86..860 | 3815 | 99.6 | Plus |
| Tm2-RF | 1200 | CG4843-RF | 132..906 | 86..860 | 3815 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15312452..15313048 | 86..682 | 2985 | 100 | Plus |
| 3R | 32079331 | 3R | 15313107..15313286 | 679..858 | 790 | 98.3 | Plus |
| 3R | 32079331 | 3R | 15313590..15313670 | 858..937 | 355 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:48:07 has no hits.
UFO11914.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:46 Download gff for
UFO11914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm2-RC | 80..939 | 79..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:10 Download gff for
UFO11914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm2-RC | 101..960 | 79..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:57 Download gff for
UFO11914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm2-RC | 101..960 | 79..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:57 Download gff for
UFO11914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15312445..15313046 | 79..680 | 99 | -> | Plus |
| 3R | 15313109..15313286 | 681..858 | 98 | -> | Plus |
| 3R | 15313591..15313670 | 859..937 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:10 Download gff for
UFO11914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11138167..11138768 | 79..680 | 99 | -> | Plus |
| arm_3R | 11138831..11139008 | 681..858 | 98 | -> | Plus |
| arm_3R | 11139313..11139392 | 859..937 | 98 | == | Plus |
