UFO11915.5prime Sequence
299 bp (202 high quality bases) assembled on 2012-06-29
> UFO11915.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGCAGATGCGCGTCACGG
AATTGCCAGCAGTTCAGCTGCTGCTGCCCCTAATCCTGATTGGATTGGCC
AGCGGACAGCGCGTCGCTCCCGGAGTGAATCCGCAGCACTATCAACAAGT
GCCGCAGCAGGTGCCGCAGCACCACCCACCGCCACCACCGCAGCACCACC
AGCCGCAGTACCAGCAACATGTCCACTCAGCACCCGGTGTGCCGCCCAC
UFO11915.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17271-RB | 1098 | CG17271-RB | 137..353 | 81..297 | 1070 | 99.5 | Plus |
| CG17271-RA | 1550 | CG17271-RA | 137..353 | 81..297 | 1070 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20821601..20821712 | 192..81 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 20821437..20821541 | 297..193 | 510 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:48:10 has no hits.
UFO11915.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:47 Download gff for
UFO11915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17271-RA | 152..371 | 77..299 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:12 Download gff for
UFO11915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17271-RA | 135..354 | 77..299 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:59 Download gff for
UFO11915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17271-RA | 135..354 | 77..299 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:59 Download gff for
UFO11915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20821436..20821541 | 193..299 | 98 | <- | Minus |
| 3R | 20821601..20821725 | 67..192 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:12 Download gff for
UFO11915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16647158..16647263 | 193..299 | 98 | <- | Minus |
| arm_3R | 16647323..16647447 | 67..192 | 93 | <- | Minus |
