UFO11919.5prime Sequence
1116 bp (1008 high quality bases) assembled on 2012-06-29
> UFO11919.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGATCAGAAGCGAGC
CATGCTTTATCCGCAAGTGGATTTCAACGCCCCGACGGCCCCCTCGCCGA
CGCCAACGAGGGAGTTGGGCAATCCCATCGCCAACGGCCTGCCCATCGAG
GCTCCTCCGTCGTACGATGTGGCGGTGTCTGTTCCGGTGGCTCCAGCGGT
TTCCGCACCAGCAATCGCCCCAGCACGACCACCGCCAGTGGTTGTCGTGG
AGCAACCAGCCCCACAACCACCCACAGTGGTTCCAACAGATACTCTACAC
TTGGGTCCAAATCGAAGTAGGGTTCTCTGCCCAGCCTGTGGAGCCAACAA
AACTACGAGGATGACACACACGGCTAACTCCAGGACCCATATGGTGGCAG
GTCTTCTCTGTTTGGTCGGATTCTGCTGCTGTGCCTGTTTTGTTCCCTAT
TGCATGAACAGTTGCCGTACTGGAAACCACTATTGTCGCAAGTGTAACAC
CTTCCTGGGAGCCTACAATCCAAAGGGGATGAACCGAGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATATATTTGCCCATGTGAAACGGGGCGAAGAGTGTCATATTGCACGTTTA
ATCAAACTGTGAACTCACCCAGGATGCTGAAACGAAAAACATATTCTCAT
AGCGTTAGGATAGCAGTTTCACGTACCGCCAATCTGCAATAATGGTTAGA
CTGCGATCGTCTGGTA
UFO11919.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13516-RB | 1319 | CG13516-RB | 455..959 | 83..587 | 2480 | 99.4 | Plus |
| CG13516-RA | 1032 | CG13516-RA | 168..672 | 83..587 | 2480 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22669599..22669855 | 83..339 | 1270 | 99.6 | Plus |
| 2R | 25286936 | 2R | 22669921..22670053 | 337..469 | 650 | 99.2 | Plus |
| 2R | 25286936 | 2R | 22670144..22670262 | 469..587 | 580 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:48:23 has no hits.
UFO11919.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:49 Download gff for
UFO11919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13516-RA | 144..648 | 83..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:19 Download gff for
UFO11919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13516-RA | 168..672 | 83..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:05 Download gff for
UFO11919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13516-RA | 168..672 | 83..587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:05 Download gff for
UFO11919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22669599..22669855 | 83..339 | 99 | -> | Plus |
| 2R | 22669924..22670053 | 340..469 | 99 | -> | Plus |
| 2R | 22670145..22670262 | 470..587 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:19 Download gff for
UFO11919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18557650..18557767 | 470..587 | 99 | == | Plus |
| arm_2R | 18557104..18557360 | 83..339 | 99 | -> | Plus |
| arm_2R | 18557429..18557558 | 340..469 | 99 | -> | Plus |
