UFO11921.5prime Sequence
1173 bp (1059 high quality bases) assembled on 2012-06-29
> UFO11921.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTGCGCAATCGAAG
ATCGAAAGGTCCTCAAGATGGGGCTCACTCTTGTGTGCCTGACTTTACTG
GCCATTCACATGGCAGATGCGGTTGTGCAGCACAGATCCTTGGAGGATGC
TCGACAGGAGCGCCAGCGATTGGTGCACAGGTACACAAAGGTCCTGAACA
AGGAGGAGGGAGCCATAAGACTGGTGGGCGGAGATAATGAGTACGAAGGC
AACATTGAGGTCCTGCACAATGGCAAGTGGGGAGCAGTTTGCGATGACGA
GTGGGATTCCACCGAAGCAGACATTGTGTGCCGACAACTGGGTTTTCCCG
GCATGCGGAGGTATACGAGAAGTGGCTTCTTTGGACCCGCTCGTCGTCGC
TTCTGGATGGACAACCTCTTTTGCGAGGGTCACGAGCAGGAACTAGTGGA
TTGCCATTTCGAGGGCTGGGGCGAGAACGATTGTGAACCAGGAGAGGCGG
CTGGCGTGGTCTGTTACCCGCCGGAAAATGCACTGATCCCCATGGCAACA
CCCATCATCCGCGACGAGGATTTGCCCAAGTACCCGATTCATTCGCGATC
ACGTTTATACGTGAGACTGCGAGGCGGAAGATCGCGGATCGAGGGACGAG
TGGAGGTCAGTTTGGATGGCGGTCGATGGGGCAGTGTGTGCGCCGATGGC
TGGTCACTTTTGGAGGCCAATGTCGTGTGCCGACAGCTCGGCCTGGCTAT
GCCAGCGAGGCCTTCCAAACCGATTTCTTTGGTGGCTTCAATGTGTCAAG
ACCCGTGCTGAGTGGCAGCGAATGCTATGGCAACGAAACGGAACTGGCTG
ACTGCCTGCATCATGATGCAATCAGGTATCATCAGCTGTCATGCAATCGG
CAGCACGTGGCCGCTGTGATCTGTGACTATATCGCCCCCGATCTGGTGGT
GGATTATTCTGGAATCGAACAAAACGCCCATTCTGGAAGAATGACCCATG
CTGCTGATGCATGCGCCATGGAGGAAACTTGGTGTGGCACGAGCGTTCAA
TTCAACGATGATCCCATGCGTTATCGATCTAGGCTATGGCTCAGGTTTAC
GCACTGGCATCATGCGCATGGCA
UFO11921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lox2-RA | 1729 | CG4402-RA | 30..1109 | 85..1151 | 4780 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21790455..21791239 | 1077..297 | 3480 | 98 | Minus |
| 2R | 25286936 | 2R | 21791337..21791551 | 299..85 | 1075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:48:26 has no hits.
UFO11921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:50 Download gff for
UFO11921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox2-RA | 105..1191 | 85..1156 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:20 Download gff for
UFO11921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox2-RA | 30..1116 | 85..1156 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:07 Download gff for
UFO11921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox2-RA | 30..1116 | 85..1156 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:07 Download gff for
UFO11921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21790365..21791237 | 299..1156 | 96 | <- | Minus |
| 2R | 21791338..21791551 | 85..298 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:20 Download gff for
UFO11921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17677870..17678742 | 299..1156 | 96 | <- | Minus |
| arm_2R | 17678843..17679056 | 85..298 | 100 | | Minus |
