UFO11923.5prime Sequence
1093 bp (969 high quality bases) assembled on 2012-06-29
> UFO11923.5prime
CAGTCGACATGTACGCCTATAATAAGATGGGTCGGGTTCCAGAGCTTGTT
ATATGCTCCTTCATAGTGGTCACCCTGCTGGTCATACACTTCTTCTCTGA
TCTGCTGAGAGCCTCCCTAGGCGGCTACTACAACCAGGATGTTACACTTT
CCCAGCTGGTTGAGTCGCAGAACTCGGACTACGCATGGTTCCTTAAGCTG
CTGGTCAATTGCTTTGGTTATAGCTGCGTCTTTGTGCCGGGCTTCTTGAT
CTACAAATATGTCGGCAGGATTAACTACCTGGAAAGAGGCAACAAGACAT
TCCTGCACAAGGCTATCAATATGTGTATCACGGGTAACTCTGGATACGAT
CAGTTGGATGCAGGGACCAGCACCGCGGATAAGGATCGTCCGGCAGCCTC
TACGGCACCAAAGCGAACGAGTTCCCAGGAGGCCGTGCAACTATTATGGT
GCTTTGGCGGCCTGATGATCTCCTATCTTACCTGGGGTGTACTGCAGGAG
AAGATAATGACTCAAAACTATCTGAACTTCACTGGAGAAAGTGCCAAGTT
TAAGGACTCTCAGTTCCTGGTGTTTTCCAATCGTCTGCTGGCCTTTCTCG
TGGCGCTGGCCTATCTACAATGGCAGCCCTCACCTGTGCGACACCGTGCA
CCTCTGTACAAATACTCCTATGCCTCCTTCTCGAATATAATGAGCGCATG
GTTCCAGTACGAGGCCCTGAAGTTTGTCAACTTTCCCACCCAGGTGCTGG
CCAAATCGTGTAAGATTATACCCGTTATGCTGATGGGCAAAATCATGTCT
AAAGCAAAGTACGAGAGTTACGAGTATGTGACGGCCCTGCTCATATCGCT
GGGCATGATCTTCTTCATGAGCGGCTCCCTCGGACAGCAGCAAGGCCAGC
GAGTGACCACGCTCACGGGCATTTTCCTGCTCCCCATGTACATGGTCTTC
GACAGCTTCACTGCCAATTGCCAGATCGCCTCTTCAGAGCTACGCATGAC
TCCGGTTGCAGAATGATGTGCGGCGTTAACCTGGTTTCCTCCATTTCACT
TGAAACCTCGCCTGGTCATGCAGTAGGATTCATGAACTCTCTT
UFO11923.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sll-RB | 1994 | CG7623-RB | 364..1447 | 7..1089 | 4940 | 97.6 | Plus |
| sll-RA | 1987 | CG7623-RA | 357..1440 | 7..1089 | 4940 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17606626..17607618 | 55..1046 | 4485 | 98.1 | Plus |
| 3R | 32079331 | 3R | 17606517..17606565 | 7..55 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:48:01 has no hits.
UFO11923.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:45 Download gff for
UFO11923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sll-RA | 357..1418 | 1..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:07 Download gff for
UFO11923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sll-RA | 353..1414 | 1..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:53 Download gff for
UFO11923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sll-RA | 353..1414 | 1..1064 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:53 Download gff for
UFO11923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17606513..17606565 | 1..55 | 94 | -> | Plus |
| 3R | 17606627..17607635 | 56..1064 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:07 Download gff for
UFO11923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13432235..13432287 | 1..55 | 94 | -> | Plus |
| arm_3R | 13432349..13433357 | 56..1064 | 97 | | Plus |
