Clone UFO11925 Report

Search the DGRC for UFO11925

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:119
Well:25
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG31496-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11925.5prime Sequence

468 bp (422 high quality bases) assembled on 2012-06-29

> UFO11925.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGGCTAATTGCAATCTGGT
TAAAGTATTTCTGTTGGTAACATTACTCGGCCTAAGTCTTATGCCATTTT
GCCAGGCACATCCAAAACGCGGTCGTAAGCGTGCCTTTGGTGTGGGTCTT
TTGGGTGGAGCTTTAGCTGGCGCTGTCATTGGCAACGTTGTGGCCAAGTC
TCAACAGGCTCCCGCTGCCGCTCCTGCTGCTCCGGTAGCCGTAGTGCATC
ACCACTATCCGCCAGGTGCTCCTGCAGCACCTGCTCCGGCATCCCAGCCA
GATCCCAAAAAGATGACTGTCATCGAAACTGGCACACCCGATGCCAACGG
ATGCTACACGCAAACTATTTCGGGAACCCCAATCCCAGCAATTCAAAATC
CTATTACGGAAGACACAG

UFO11925.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31496-RA 1030 CG31496-RA 84..468 80..468 1815 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7345517..7345780 189..454 1200 98.5 Plus
3R 32079331 3R 7345152..7345263 80..191 560 100 Plus
Blast to na_te.dros performed on 2014-11-28 17:48:38 has no hits.

UFO11925.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:53 Download gff for UFO11925.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31496-RA 84..468 80..468 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:29 Download gff for UFO11925.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31496-RA 84..468 80..468 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:13 Download gff for UFO11925.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31496-RA 84..468 80..468 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:13 Download gff for UFO11925.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7345152..7345261 80..189 100 -> Plus
3R 7345518..7345792 190..468 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:29 Download gff for UFO11925.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3170874..3170983 80..189 100 -> Plus
arm_3R 3171240..3171514 190..468 97   Plus