UFO11926.5prime Sequence
1098 bp (1004 high quality bases) assembled on 2012-06-29
> UFO11926.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGTGTTGTTGGCAATCTC
TTTGCTCCATAGCTTGGTTCGCCGCGATGTCGGCAGCCCAGGAGACGCTT
TCCGACACCCCGCAGAATAGCACACCTTTGTTAGCCACAACTGTGTCGAC
CACGAAGGTGATAAGTTTCCGCCCTCGTTATCCATACATCGTCTCCATAG
GAGAGAACCTTAAAGGATACTACAAGCACCTTTGCGTGGGCGTTATACTT
TCGAATGAGTTCGTGCTCAGTGCAGCCCACTGCATCCAAACGAATCCAAC
CAAACAACTGTACGTGGCTGGTGGCGCCGATTCGCTGAACAGCCGGAAGC
AGACCCGCTTCTTCGTCGTGGAAAGAAGATGGCATCCCCAGTTTAGGGTG
CTCGGCGGCAACGACATTGCCGTGTTGAGGATTTACCCCAAATTCCCGCT
CGACGATGTGCGATTTCGTAGCATTAACTTTGCTGGAAAGCCTCAAAGGG
ATAGTGGCACCCAGGCCTCGCTGGTTGGCTGGGGTCGGGTTGGCGTCGGC
AAGATAAGAAAACTCCAGGAGATGCCCTTCTTGACCATGGAGAACGATGA
GTGCCAGCAAAGCCATCGCTTCGTTTTCCTCAAACCGCTTGACATCTGTG
CGATGCATTTGAAAGGACCGCGAGGTCCCTGCGACGGAGATTCTGGAGCT
CCCTTGATGAATGTGGCAAAGAGAAGCTGTACGGATTACTTTCCTACGGT
CGAAAAGCCTGCACCCCATTAAAACCCTATGCCTTCACTCGCATCAACGC
ATACTCCAGCTGGATTCAGAATCCATGGACTCTATGGCTGCGAGATTAAA
GTCTACAATTAATCGCACTGTATGGAAGATGGGTAGCAAGCTTTCTAGAC
ATCGTTTGGCGCGCGGGCCCAGTTAGTGTCATATCATATCATATCATATC
ATATCACACTAGGCTAGAATCTGTCATGACTGTGCTGGAATTCTCACATA
AACGCGCCGCACGAACGTCTGACATCGAATGGTGAGTCTACTGATTAT
UFO11926.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10041-RA | 952 | CG10041-RA | 17..875 | 82..934 | 4145 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12351409..12352063 | 736..82 | 3275 | 100 | Minus |
| 3R | 32079331 | 3R | 12350900..12351096 | 927..736 | 740 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:48:41 has no hits.
UFO11926.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:53 Download gff for
UFO11926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10041-RA | 12..881 | 74..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:31 Download gff for
UFO11926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10041-RA | 12..881 | 74..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:15 Download gff for
UFO11926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10041-RA | 12..881 | 74..941 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:15 Download gff for
UFO11926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12350886..12351096 | 736..941 | 95 | <- | Minus |
| 3R | 12351410..12352068 | 74..735 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:31 Download gff for
UFO11926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8176608..8176818 | 736..941 | 95 | <- | Minus |
| arm_3R | 8177132..8177790 | 74..735 | 99 | | Minus |
