UFO11927.5prime Sequence
1102 bp (1001 high quality bases) assembled on 2012-06-29
> UFO11927.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGAGATTAGATGGGGCT
CTAGAGCCCCGGCCCCGTCAAGGAGCTGCCACAATCAAGGGCCGCCAGCC
CCTGAGGCGCGAAACACGCGAACCATGTGAGACGCAACAGCAGCAGCCAG
CTGACGAAGACGACGAGGCCACAGACGCTGAGTGTTTGACCACCAACAGC
AGCAGCAGCAGCAGCAGCACCAGCAGCACCAGCAGCAACAATTGCCAAGC
CAACTTGGTCTGCAATCCAAAGAGAACAACATCAGCAACGCCCACGCCTA
GAAAAACAACCGGCGGCAGAGGCAATACCAGGCATACCATATTAATGGCG
CCCAACGTGGGGCATCAGCGGAAGAGCCTTGGCCTGCGACTTCCGATGAA
GCAGGGCCGCAGCCGGCGGAGAATGATGGGTGCGGAATGGGGCTGGGAGC
GCCTTAACGGCCTGCTCCTGTGCCTGATTTCCGTTATTGCCCTGCTGCCG
CCGCTGACGCTCGGCGATGACGGCGATAATTTCTTTGCCGTGAATGCCTT
TAGTGCGGGTCCGGAGACGACAACGCCAGAGTTCGATTATGCCAGTCGTG
GGCAGAAGAAGTTCGGCGACAAGTGCGATAATACCCTGGAATGCGGCTTC
CCCGGCTCCATCTGCGATCCCAAGAAGAAGTCCTGCCAGTGCACCGAGGA
TCTGCCCGTCACCAATCACTATGACAAATGTGGCAAAGAGGCCGCCGTGA
ACGAGTCCTGCTTCTTTAACGAGCAGTGCGAGATGAGATACTTCCAGACG
GAGTGCCGCGATGGACGCTGCATCTGCCGGTTCGAGATGTCACCCATTTG
GGGCAGGACGGATCCGTGAGTGCAAAGGCGCCAGGACAGAGGGACCCGAG
ACTACATCGACCCGGCATGATGCGTGCTGTAGATGCATGATGTTGTATTA
TTGTTCGTCTGCGATGTTAGCAGCTCGCTGCTGAACGGACCATCTCACCG
CCAATCTCGCTGATGACGTCTCCTGCTGCGGAACGCAAGCTGCTCCAGGC
AG
UFO11927.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14509-RE | 4716 | CG14509-RE | 268..1319 | 83..1097 | 4345 | 96.3 | Plus |
| CG14509-RD | 4231 | CG14509-RD | 269..1320 | 83..1097 | 4345 | 96.3 | Plus |
| CG14509-RC | 2372 | CG14509-RC | 268..1319 | 83..1097 | 4345 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29181159..29181711 | 635..83 | 2765 | 100 | Minus |
| 3R | 32079331 | 3R | 29178667..29178820 | 788..635 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 29177599..29177742 | 928..787 | 620 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:48:44 has no hits.
UFO11927.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:54 Download gff for
UFO11927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14509-RC | 268..1200 | 83..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:32 Download gff for
UFO11927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14509-RC | 268..1200 | 83..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:16 Download gff for
UFO11927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14509-RC | 268..1200 | 83..1002 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:16 Download gff for
UFO11927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29177461..29177495 | 935..966 | 91 | <- | Minus |
| 3R | 29177593..29177740 | 789..934 | 95 | <- | Minus |
| 3R | 29178667..29178819 | 636..788 | 100 | <- | Minus |
| 3R | 29181159..29181711 | 83..635 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:32 Download gff for
UFO11927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25003183..25003217 | 935..966 | 91 | <- | Minus |
| arm_3R | 25003315..25003462 | 789..934 | 95 | <- | Minus |
| arm_3R | 25004389..25004541 | 636..788 | 100 | <- | Minus |
| arm_3R | 25006881..25007433 | 83..635 | 100 | | Minus |
