UFO11928.5prime Sequence
1131 bp (1045 high quality bases) assembled on 2012-06-29
> UFO11928.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGTCGACGGCCCTGGTT
TATTGGCAGTCAATGAATGGCGGCGATCCGGTTGACAAGGCCACCGCGGA
TTGGGCGCCATTCGTGGTTGGTGCAGCAGCTGGTGGCAGCTTCAGTAGCA
GCATCATCACCAGCAGCAGCAGCAGCTTGAACCACCATCCGCACAACGGC
CACCACAATCACCATCATCCGCCTCATTACATCAATTATTTGGCGCAAAT
TGGCTGCCAGCATCGTGTCAGAAATTGGCCAACAAATGGCAATCAGGATC
AGGCGGATGACGACGACGCTGGCCATCAGATCATCTCTAAATTCCTGCCC
AAAAGTGCCTGGGACACGGTGCTGTTGGATGTGAAGCGGGATGTAGATGA
AGATGGAGATAGAGATAGAGATCGGGTCGATGGCAATGTGCTGATGGTTC
AGGGATCGTCATCATCATCATCGAGAATGAAGGCGGAACGGGCACTCTAT
TATACTATGTCCGCTTATGGGTCCAGCGGCGGCAGCGTCGACGCAGCGCA
GGGCAGCGGAAGCGGGGGCGGAAGACAGCGCCACGCCCCACTCTACGGGC
GATTCGTCGACGCAGAGGATCTGCCTGCCACGCACCGGGATGTCATGCAC
CATCACTCTAGTCCCTCGTCTTCGTCGGAGGTGCGCGCCATGCAGGCCCG
GATTCCCAACCACTTTCGGGAGCCCGCCTCGGGACCTTTGCGCAAGCTGA
GTGTCGATCTGATAAAGACCTACAAGCACATCAACGAGGTTTACTATGCG
AAATAGAAACGTCGTGCCCAGCAGACGCAAGGAGACGACGACTCATCTAA
CAAAAGGAGCGAAACTTTATACGACGGCTACGACGACGATATCACGACTA
TATATCAGATGGCGAAAGTTTTGGATCGCTACGAGATCGACTCTCTGATC
GGCAAGGCAGTTTGGCAAGGTGGTGAAGCTTACGACACGAGGGAGCATGC
ACGTGGCGATCAGATATTAAGATTAGAATCGTCTAACAGGCAAGATCGAG
GTCAGGTTGCTCGAAATGAGGACGGCGATGC
UFO11928.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mnb-RI | 2978 | CG42273-RI | 162..1221 | 83..1119 | 4610 | 97.1 | Plus |
| mnb-RH | 4228 | CG42273-RH | 162..1221 | 83..1119 | 4610 | 97.1 | Plus |
| mnb-RF | 4460 | CG42273-RF | 1916..2500 | 558..1119 | 2235 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17874405..17874879 | 557..83 | 2375 | 100 | Minus |
| X | 23542271 | X | 17873255..17873400 | 703..558 | 730 | 100 | Minus |
| X | 23542271 | X | 17872617..17872753 | 840..704 | 685 | 100 | Minus |
| X | 23542271 | X | 17870485..17870659 | 1002..837 | 450 | 93.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:48:48 has no hits.
UFO11928.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:54 Download gff for
UFO11928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnb-RH | 151..1224 | 71..1122 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:35 Download gff for
UFO11928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnb-RH | 151..1224 | 71..1122 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:18 Download gff for
UFO11928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnb-RH | 151..1224 | 71..1122 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:18 Download gff for
UFO11928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17870486..17870657 | 839..1001 | 94 | <- | Minus |
| X | 17872619..17872753 | 704..838 | 100 | <- | Minus |
| X | 17873255..17873400 | 558..703 | 100 | <- | Minus |
| X | 17874405..17874890 | 71..557 | 99 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:35 Download gff for
UFO11928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17764519..17764690 | 839..1001 | 94 | <- | Minus |
| arm_X | 17766652..17766786 | 704..838 | 100 | <- | Minus |
| arm_X | 17767288..17767433 | 558..703 | 100 | <- | Minus |
| arm_X | 17768438..17768923 | 71..557 | 99 | == | Minus |
