UFO11934.5prime Sequence
1151 bp (1048 high quality bases) assembled on 2012-06-29
> UFO11934.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCTTACGTTATGGA
ACCAGGACATCTTGTACGGCTTCGGGTTCGCCAGCACAATGCACTCGAAG
TACGCATCATCGCCCTCCTTGATGTCGTCGGGATTCAGCGAGGAGCCAAT
CTTGAGCGTGGTGGTCGGCTGGTCTGTGGACACATGGGAGAAACGATTTT
TTTGCAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT
CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGG
CGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTC
ACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGG
GAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGT
GTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAAC
GTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCA
TATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGATGAGCATT
CATCAGCGGGCAAGATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTT
TTCTTTACGTCTTTAAAAGCCGTATATCCAGCTGACGTCTGTTATAGTAC
ATTGACACTGACTGAAATGCCTCAATGTTCTTACGATGCCATTGGATATA
TCACGTGTAATTCAAGGATTTTTTCTCATTAGCTCTAACTCTGAGATCTA
C
UFO11934.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14372-RC | 4919 | CG14372-RC | 1671..1802 | 223..92 | 660 | 100 | Minus |
| CG14372-RD | 5123 | CG14372-RD | 1875..2006 | 223..92 | 660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13458338..13458514 | 258..82 | 885 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 17:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 827..894 | 123 | 68.1 | Plus |
| rover | 7318 | rover ROVER 7318bp | 6826..6896 | 1140..1070 | 121 | 67.1 | Minus |
UFO11934.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:50 Download gff for
UFO11934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17025-RA | 423..611 | 73..259 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:22 Download gff for
UFO11934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14372-RD | 1864..2011 | 88..236 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:08 Download gff for
UFO11934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14372-RD | 1864..2011 | 88..236 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:08 Download gff for
UFO11934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13458338..13458523 | 73..258 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:22 Download gff for
UFO11934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9284060..9284245 | 73..258 | 98 | | Minus |
