UFO11936.5prime Sequence
1176 bp (1064 high quality bases) assembled on 2012-06-29
> UFO11936.5prime
GGAATTGGCCAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGC
ATACATTATACGAAGTTATCAGTCGACATGTCTCTCGTGGATAAATTAAA
CTATTACAGCACACGAAAATCGTTCAAATATGGCATACCCTTCCTCATCA
TGATGGTGGCTGGCTCCTTTGGACTGCAGCAGTTCTCCAACCTCAGGTAT
CAGTACGCCAAGAAGCAGCCGGTAACGCCGGAGGAGATGAAAAAGTACGG
CGTAAGCATGAAAAACCGCAAGGATGTGACGTTGGAGTCGGAGTACGACA
AAGTCAAGTCCGTGGACATAGAGAACTGGGAGAACAAACGCGGTCCACGT
CCCTGGGAGGAGCAGGAAGATCAGCCGACGACAGCGAAGCACGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCT
TGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCAT
ATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTG
AGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGGTT
TCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAA
ATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGGTTTGCTCAT
GGAAAACGGTGTAACAAGGGTGACACTATCCATATCACAGCTCACGTCTT
TCATGCATACGAAATCGGATGAGCATTGTCAGGCGGGCCAAGAATGGTGA
ATAAGGCGGAATAAAACTGGCCTATTTTCTTACCGTCTTTAAAAGCGTAA
ATCCAGCTGAGCGTTCTGGTTTAAGA
UFO11936.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo43-RC | 627 | CG14865-RC | 48..362 | 78..392 | 1575 | 100 | Plus |
| l(3)neo43-RB | 460 | CG14865-RB | 48..362 | 78..392 | 1575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15278246..15278444 | 392..194 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 15278502..15278621 | 197..78 | 600 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 17:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..293 | 958..1022 | 133 | 69.2 | Plus |
UFO11936.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:52 Download gff for
UFO11936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo43-RB | 1..330 | 73..400 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:26 Download gff for
UFO11936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo43-RB | 1..330 | 73..400 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:11 Download gff for
UFO11936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo43-RB | 43..369 | 70..400 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:11 Download gff for
UFO11936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15278246..15278443 | 195..392 | 100 | -> | Minus |
| 3R | 15278502..15278621 | 78..194 | 97 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:26 Download gff for
UFO11936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11103968..11104165 | 195..392 | 100 | -> | Minus |
| arm_3R | 11104224..11104343 | 78..194 | 97 | == | Minus |
