UFO11937.5prime Sequence
723 bp (552 high quality bases) assembled on 2012-06-29
> UFO11937.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGTCGAAGCCGGGAACCC
CCAAGCACGGCGCCGGCTCATCCTCAGCAGCTGCTGCCCCCGAGAAGATT
AGCAAATACAATATCAGCACAGAGAAATGCGGGGATCTGACGGTCATAGT
GCAGGGCGACCTGTCACAGCAGGAGAAACGCGCCGTGTTCATAACGGTTC
ACGACCTGGGCTGCAACCACAACTCATTCCAGGAGTTCGTGAGCAGTCCC
TGCATGACGGAGATCAAGGAGCGCTCCTGCTTCATCCACGTGGACGTGCC
GGGGCACGCGGACAACGCGGAGGCCCTGGCTGACGGCTTTCCGTTTCCCT
CGCTCCAGTCCCTGGGCGAGGACCTGGTCACCGTGCTGGACTACCTGCAC
GTAAAAGTACGTGATCGGCCTAGGGCGAGGGTTGCCGGAGCCCAATGTCC
CTGGCCCCGGCTTCGGGACTGGCCCAATCCCCAAGCCCGGGGTGGCTGGG
CCTCTATCCCTTGAATCCAACCGCCGAACTGGGCAAGCCCCCGCCAAGGG
TAATGTGCAGTCCTTTCCAAGAAACAAAGGTTCCATTTACCTGGGAAAAG
ACCGAACAAAGGGTGGCCCCATCCGGCTGGGAAGCTTTTTCGATGGGACC
CCCAAATTTCGGGACTTGTTATG
UFO11937.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RG | 1872 | CG2082-RG | 197..656 | 81..554 | 2050 | 97 | Plus |
| CG2082-RD | 1059 | CG2082-RD | 197..656 | 81..554 | 2050 | 97 | Plus |
| CG2082-RA | 1863 | CG2082-RA | 197..656 | 81..554 | 2050 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5762296..5762500 | 474..269 | 980 | 99.5 | Minus |
| 3R | 32079331 | 3R | 5771630..5771702 | 153..81 | 365 | 100 | Minus |
| 3R | 32079331 | 3R | 5762557..5762622 | 268..203 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 5762704..5762755 | 205..154 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:48:55 has no hits.
UFO11937.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:56 Download gff for
UFO11937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RG | 177..645 | 74..559 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:38 Download gff for
UFO11937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RA | 192..660 | 74..559 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:22 Download gff for
UFO11937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RA | 192..660 | 74..559 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:22 Download gff for
UFO11937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5762557..5762620 | 205..268 | 100 | <- | Minus |
| 3R | 5762705..5762755 | 154..204 | 100 | <- | Minus |
| 3R | 5771630..5771705 | 74..153 | 95 | == | Minus |
| 3R | 5762225..5762500 | 269..559 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:38 Download gff for
UFO11937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1587947..1588222 | 269..559 | 94 | <- | Minus |
| arm_3R | 1588279..1588342 | 205..268 | 100 | <- | Minus |
| arm_3R | 1588427..1588477 | 154..204 | 100 | <- | Minus |
| arm_3R | 1597352..1597427 | 74..153 | 95 | == | Minus |
