UFO11939.5prime Sequence
1179 bp (1065 high quality bases) assembled on 2012-06-29
> UFO11939.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCCAGCATATCGTT
TAAGGGTCGACCCACCCAGGTGTTGCACACCTATCAAGTTTGGCGCATTG
GCAGCGATGAAAACGACAAGAGTCTTGACTATTATTCGCCCGATAAGTCG
TTGCATAAGTTGCATGCCAGCTTGACGCGCAGCGAGAATGCATTGATTTT
GGATAACGAAAGTCGCATCGGATGTGTAGCCGTAAATGGGACAAGGATCG
GTGGTCCGATGATCATTACCTATCGCGATGCCATCAATGGCATTGTTAAG
CTCCGATTTGGCAATATCGAGGGATATCTTCGCGTATCGGGGAGCATCAC
CGGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAA
GAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCC
AGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAAAT
AGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGA
ACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAACGTTTCAGT
TGCTCATGAAAACGGTGTACAGGTGACACTATCCCATATCACAGCTCACG
TCTTCATGCATACGAATCGATGACATCATCAGCGGCAGATGTATAAGCGA
TAAACTTGGCTATTTTCTTACGCTTAAGCGTAAATCACTGACGTGGTAGT
CTGACACTGACGAAGTAAGTTCTTCAAGC
UFO11939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15734-RD | 489 | CG15734-RD | 82..402 | 84..404 | 1605 | 100 | Plus |
| CG15734-RC | 472 | CG15734-RC | 82..402 | 84..404 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12086556..12086765 | 404..195 | 1050 | 100 | Minus |
| X | 23542271 | X | 12086831..12086944 | 197..84 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:48:57 has no hits.
UFO11939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:56 Download gff for
UFO11939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15734-RC | 75..413 | 76..413 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:40 Download gff for
UFO11939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15734-RC | 75..413 | 76..413 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:24 Download gff for
UFO11939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15734-RC | 75..413 | 76..413 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:24 Download gff for
UFO11939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12086545..12086762 | 198..413 | 98 | <- | Minus |
| X | 12086831..12086951 | 76..197 | 97 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:40 Download gff for
UFO11939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11980578..11980795 | 198..413 | 98 | <- | Minus |
| arm_X | 11980864..11980984 | 76..197 | 97 | == | Minus |
