Clone UFO11940 Report

Search the DGRC for UFO11940

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:119
Well:40
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptskap-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11940.5prime Sequence

1021 bp (890 high quality bases) assembled on 2012-06-29

> UFO11940.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCTTCATTCTTGGC
ACGAACTGGCGGCCCCCTGATCGAAACCGTTAGGCCAGCGGCCATAAAAA
AGATTCTTGGCCTGGCTCCCATCGCCGTCCAGCAGCTGAGGAACCTCAAT
GTCCAGGAACACGTTTCCTACAGTCTGCTCAATGAGGCCAAGATCCCAAC
ACCTCGTTTCGCTGTTGCCAAGAACGGCAAGGAGGCCAACGATATCGCCA
CCAAGCTGAAGACCGATAACCTGGTGCTGAAGGCTCAGGTTTTGGCCGGA
GGACGAGGCAAAGGAACCTTTAAGAATGGCCTGAAGGGAGGTGTGCGAGT
GGTCTACGATCCCCAGACCGCTGAAGAACTTTCAAGCAAAATGATCGATC
AGCTTCTGGTCACCAAGCAAACCGGAGCAGCCGGTCGCATCTGCAAAAAG
GTGATGGTTGCCGAAAGGAAGTTCCCCCGCCGTGAGTTCTACTTCGCCGT
GATGATGGAGCGTGCCTTTAACGGTCCCGTGCTGATCGCCTCCAAGGAGG
GTGGTGTTGATATTGAGGAGGTGGCTGCCAGCAGTCCAGATGCCATTTTG
TACGAACCCATCGATATATGCACTGGCTTGACCAGTGAACAGGCCGAAAA
GATCGTCAAGAAGGTTGGTCTGGGCGGCGATGGCGAGGACACACATGTCC
AGATGCTGTTGAATCTGTATGACCTGTTCGTCAAGAGGATGCCCTCTTGG
TTGAGATCACCCCTATGCCGAGGATGCCATGTCCGGCTGCTTCTTCGCAT
TGGATGCTAAGCTGCGATTTGATGACACGCCGAGTTTCGTCAGAGGAGCT
GTTTGCGCTGCCGATTGACCAGGAGATCCCAGGAAGTCGAGCTGCCAATA
CATCTTGACTAACTGCCTGATGACTATCGCTGCATGGTGAACCGCGCGGT
CTGCATGACCACATGGATATC

UFO11940.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
skap-RD 1780 CG11963-RD 76..1035 84..1021 4180 97.1 Plus
skap-RC 1767 CG11963-RC 63..1022 84..1021 4180 97.1 Plus
skap-RH 1914 CG11963-RH 76..1032 84..1021 4125 96.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8940922..8941190 573..839 1230 98.9 Plus
3R 32079331 3R 8940699..8940862 410..573 820 100 Plus
3R 32079331 3R 8940481..8940634 256..409 770 100 Plus
3R 32079331 3R 8939667..8939772 151..256 530 100 Plus
3R 32079331 3R 8938820..8938888 84..152 345 100 Plus
3R 32079331 3R 8941408..8941479 842..911 260 97.2 Plus
Blast to na_te.dros performed 2014-11-28 17:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4904..4953 266..217 114 74.5 Minus

UFO11940.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:57 Download gff for UFO11940.5prime
Subject Subject Range Query Range Percent Splice Strand
skap-RB 69..907 75..911 98 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:42 Download gff for UFO11940.5prime
Subject Subject Range Query Range Percent Splice Strand
skap-RC 53..894 75..911 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:27 Download gff for UFO11940.5prime
Subject Subject Range Query Range Percent Splice Strand
skap-RC 53..894 75..911 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:27 Download gff for UFO11940.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8938814..8938888 77..152 94 -> Plus
3R 8939669..8939772 153..256 100 -> Plus
3R 8940482..8940634 257..409 100 -> Plus
3R 8940699..8940861 410..572 100 -> Plus
3R 8940922..8941193 573..841 97 -> Plus
3R 8941408..8941479 842..911 97 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:42 Download gff for UFO11940.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4764536..4764610 77..152 94 -> Plus
arm_3R 4765391..4765494 153..256 100 -> Plus
arm_3R 4766204..4766356 257..409 100 -> Plus
arm_3R 4766421..4766583 410..572 100 -> Plus
arm_3R 4766644..4766915 573..841 97 -> Plus
arm_3R 4767130..4767201 842..911 97 == Plus