UFO11940.5prime Sequence
1021 bp (890 high quality bases) assembled on 2012-06-29
> UFO11940.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCTTCATTCTTGGC
ACGAACTGGCGGCCCCCTGATCGAAACCGTTAGGCCAGCGGCCATAAAAA
AGATTCTTGGCCTGGCTCCCATCGCCGTCCAGCAGCTGAGGAACCTCAAT
GTCCAGGAACACGTTTCCTACAGTCTGCTCAATGAGGCCAAGATCCCAAC
ACCTCGTTTCGCTGTTGCCAAGAACGGCAAGGAGGCCAACGATATCGCCA
CCAAGCTGAAGACCGATAACCTGGTGCTGAAGGCTCAGGTTTTGGCCGGA
GGACGAGGCAAAGGAACCTTTAAGAATGGCCTGAAGGGAGGTGTGCGAGT
GGTCTACGATCCCCAGACCGCTGAAGAACTTTCAAGCAAAATGATCGATC
AGCTTCTGGTCACCAAGCAAACCGGAGCAGCCGGTCGCATCTGCAAAAAG
GTGATGGTTGCCGAAAGGAAGTTCCCCCGCCGTGAGTTCTACTTCGCCGT
GATGATGGAGCGTGCCTTTAACGGTCCCGTGCTGATCGCCTCCAAGGAGG
GTGGTGTTGATATTGAGGAGGTGGCTGCCAGCAGTCCAGATGCCATTTTG
TACGAACCCATCGATATATGCACTGGCTTGACCAGTGAACAGGCCGAAAA
GATCGTCAAGAAGGTTGGTCTGGGCGGCGATGGCGAGGACACACATGTCC
AGATGCTGTTGAATCTGTATGACCTGTTCGTCAAGAGGATGCCCTCTTGG
TTGAGATCACCCCTATGCCGAGGATGCCATGTCCGGCTGCTTCTTCGCAT
TGGATGCTAAGCTGCGATTTGATGACACGCCGAGTTTCGTCAGAGGAGCT
GTTTGCGCTGCCGATTGACCAGGAGATCCCAGGAAGTCGAGCTGCCAATA
CATCTTGACTAACTGCCTGATGACTATCGCTGCATGGTGAACCGCGCGGT
CTGCATGACCACATGGATATC
UFO11940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
skap-RD | 1780 | CG11963-RD | 76..1035 | 84..1021 | 4180 | 97.1 | Plus |
skap-RC | 1767 | CG11963-RC | 63..1022 | 84..1021 | 4180 | 97.1 | Plus |
skap-RH | 1914 | CG11963-RH | 76..1032 | 84..1021 | 4125 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8940922..8941190 | 573..839 | 1230 | 98.9 | Plus |
3R | 32079331 | 3R | 8940699..8940862 | 410..573 | 820 | 100 | Plus |
3R | 32079331 | 3R | 8940481..8940634 | 256..409 | 770 | 100 | Plus |
3R | 32079331 | 3R | 8939667..8939772 | 151..256 | 530 | 100 | Plus |
3R | 32079331 | 3R | 8938820..8938888 | 84..152 | 345 | 100 | Plus |
3R | 32079331 | 3R | 8941408..8941479 | 842..911 | 260 | 97.2 | Plus |
Blast to na_te.dros performed 2014-11-28 17:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4904..4953 | 266..217 | 114 | 74.5 | Minus |
UFO11940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:57 Download gff for
UFO11940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skap-RB | 69..907 | 75..911 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:42 Download gff for
UFO11940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skap-RC | 53..894 | 75..911 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:27 Download gff for
UFO11940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skap-RC | 53..894 | 75..911 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:27 Download gff for
UFO11940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8938814..8938888 | 77..152 | 94 | -> | Plus |
3R | 8939669..8939772 | 153..256 | 100 | -> | Plus |
3R | 8940482..8940634 | 257..409 | 100 | -> | Plus |
3R | 8940699..8940861 | 410..572 | 100 | -> | Plus |
3R | 8940922..8941193 | 573..841 | 97 | -> | Plus |
3R | 8941408..8941479 | 842..911 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:42 Download gff for
UFO11940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4764536..4764610 | 77..152 | 94 | -> | Plus |
arm_3R | 4765391..4765494 | 153..256 | 100 | -> | Plus |
arm_3R | 4766204..4766356 | 257..409 | 100 | -> | Plus |
arm_3R | 4766421..4766583 | 410..572 | 100 | -> | Plus |
arm_3R | 4766644..4766915 | 573..841 | 97 | -> | Plus |
arm_3R | 4767130..4767201 | 842..911 | 97 | == | Plus |