UFO11941.5prime Sequence
1183 bp (1087 high quality bases) assembled on 2012-06-29
> UFO11941.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAATCTGCTGTGCT
GCTGTTGTTGCAGTAACATGGCACCAAACCAACGCGTCACACGCAAATGG
GAACTGTTTGCCGGACGCAATAAATTCTACTGCGATGGATTGCTAATGTC
CGCACCGCACACAGGCGTCTTCTACTTGACGTGCATCCTGATTACCGGCA
CCAGTGCGCTCTTCTTTGCCTTCGACTGTCCCTTTCTGGCGGACAGCATA
AATCCGGCCATTCCGATTGTGGGAGCGGTACTATACTTCTTCACGATGAG
CTCCTTGCTGCGCACAACCTTCACGGATCCGGGCGTCATACCGCGAGCCT
CCAACGATGAGGCCGCCTATATTGAAAAGCAAATAGAGGTGCCAAACTCG
CTGAACAGTCCCACATATCGACCGCCGCCGAGGACCAAGGAGGTCCTGGT
CAAAGGACAAACGGTCAAGCTGAAATACTGTTTCACCTGCAAGATCTTCC
GGCCGCCGAGGGCCTCGCACTGCAGCCTGTGCGACAACTGCGTGGACCGC
TTCGATCACCACTGTCCCTGGGTGGGAAACTGCGTGGGCAAGCGGAATTA
TCGGTTCTTTTATTTGTTTCTAGTCTCATTGGCATTTTTAGCTGTATTTA
TATTCTCGTGCTCTGTGACGCATTTAGTTTTATTGATGAAGAAGGAGCAC
GAGGTCTTTAATGTAATCAAGGCGGCGCCCTTCACTGTGATTGTTGTGTT
CATTTGCTTCTTCTCGATATGGTCGGTGATCGGCCTGGCCCGGCTTCCAT
ACCTATCTGACGACTAGCGATCAGACAACCAACGAGGATCTCAAGGGATC
CTTCTCCTCCAAAGGCGGTCCACGCACCCAAAATCCCTATTCACGGGGCA
ACATTTGCCTGAACTGCTGTCACATCCTGTGCGGACCCATGACGCCCTCG
CTGATCGATAGACGCGGCATCGCCACCGACGAGTTCATCAGCAGATGCAG
CACAGTCGAGTCCGCGGCACGCACTGATCGATGTGCTGAGTGCCTCGCAC
ATGTCACCACCTCCCAGCCAATGATGGTGTTTAGGTGTGGGTGCATCGTG
GGCGCGTCGAATCACCATGTGAACGACTAAGTC
UFO11941.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| app-RR | 4156 | CG42318-RR | 1211..2279 | 85..1148 | 5070 | 98.7 | Plus |
| app-RO | 4422 | CG42318-RO | 1592..2660 | 85..1148 | 5070 | 98.7 | Plus |
| app-RM | 4537 | CG42318-RM | 1592..2660 | 85..1148 | 5070 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12215615..12215805 | 624..434 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 12219978..12220168 | 275..85 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 12216419..12216579 | 436..276 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 12213719..12213873 | 889..734 | 730 | 99.4 | Minus |
| 3L | 28110227 | 3L | 12213354..12213475 | 1011..890 | 580 | 98.4 | Minus |
| 3L | 28110227 | 3L | 12213940..12214052 | 733..621 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 12213179..12213299 | 1127..1010 | 410 | 95 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:49:04 has no hits.
UFO11941.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:58 Download gff for
UFO11941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| app-RI | 1538..2608 | 81..1148 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:44 Download gff for
UFO11941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| app-RM | 1590..2660 | 81..1148 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:29 Download gff for
UFO11941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| app-RM | 1590..2660 | 81..1148 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:29 Download gff for
UFO11941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12213155..12213297 | 1012..1148 | 92 | <- | Minus |
| 3L | 12213354..12213475 | 890..1011 | 98 | <- | Minus |
| 3L | 12213719..12213873 | 734..889 | 99 | <- | Minus |
| 3L | 12213940..12214051 | 622..733 | 100 | <- | Minus |
| 3L | 12215618..12215802 | 437..621 | 100 | <- | Minus |
| 3L | 12216419..12216579 | 276..436 | 100 | <- | Minus |
| 3L | 12219978..12220168 | 84..275 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:44 Download gff for
UFO11941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12206255..12206397 | 1012..1148 | 92 | <- | Minus |
| arm_3L | 12206454..12206575 | 890..1011 | 98 | <- | Minus |
| arm_3L | 12206819..12206973 | 734..889 | 99 | <- | Minus |
| arm_3L | 12207040..12207151 | 622..733 | 100 | <- | Minus |
| arm_3L | 12208718..12208902 | 437..621 | 100 | <- | Minus |
| arm_3L | 12209519..12209679 | 276..436 | 100 | <- | Minus |
| arm_3L | 12213078..12213268 | 84..275 | 99 | <- | Minus |
