UFO11942.5prime Sequence
1087 bp (996 high quality bases) assembled on 2012-06-29
> UFO11942.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATAACTCCAAA
CGCTCGCGACTCAGCGACAAGGATGAAGGTCCGTGCAAAATTCGAAAAGC
GACCAACCTGTCGGATAAGAAGGCAATCGTAGATCTATTCTCTAGTTTCG
TGAATACACATCATTTTCGACCCAACCCCGATGGTCAGAGGATTGATAAA
ATAATTGTAATAAAGTTAGTGGAACGCTTAGAAACTACAGATGTAAATGA
TCGCAAATTTATGCAGAGTATATTGCGGCGCGTCTATTTAAAGTGCACCG
ACTTGCGTCTATTTATTCGAAATCAGCTCAACGATGTATTCTTTCGATTG
ATTTTCGAAGGAACTGACTTTCATTGCATCCCAGAAATTCTGGAAATTTA
CTATGATATAATCAAGGGATTTACTCAACCATATGAGACTGAACATGAGC
AACTGCTCTTTAAGATCCTTTTGCCTTTGCACAAGCCGCCATCGTTAACA
AAGTATTTTCATCAGCTGATAAAATGCATTATTGCATTCCTTAACCAATA
TCCATCTTTCATTGAAAAATATGTCAAAGGTCTTCTACGGCTCTGGCCGA
AGACGTCCTTTACTAAGGTGACATTGTTTCTAAGCGAGATTGCCAGAATT
TTGGTAATAAAAAATGAGCAAGAGGTCAAGAAAGTCATGCTGACGATTTT
TAATCATATTGCAAAATGTCTGTGTGATGAAAGCAATAAGATAGCCGAGC
ACACTCTTCTTTTGTGGAAAAACAATGCGGTTTTGGAGGTTATACATCGA
AACCACGCGCTCATCATGCCCATTGTATATCACACGTATACGCGTATTGA
TACGTCATATATGAGAAACATGCAACGATGCTCATGTTATGACTTATAAA
TGACATCGTGTAAGTGTATGTGTACCACAACAGACACAATCACAGATCAT
CTGCGCGAGATATTATCTCACGATGCACGTAGGTAAGACGTTCGCAGCTG
GTACGTAGTAGTGCATCATAGTGCTTGATTCTCTCAT
UFO11942.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32568-RC | 1818 | CG32568-RC | 99..934 | 86..918 | 4105 | 99.6 | Plus |
| CG32568-RB | 1539 | CG32568-RB | 99..934 | 86..918 | 4105 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16741524..16741857 | 457..790 | 1670 | 100 | Plus |
| X | 23542271 | X | 16741237..16741429 | 264..456 | 965 | 100 | Plus |
| X | 23542271 | X | 16741004..16741183 | 86..265 | 900 | 100 | Plus |
| X | 23542271 | X | 16741902..16742034 | 789..918 | 515 | 97.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:49:06 has no hits.
UFO11942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:58 Download gff for
UFO11942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32568-RB | 99..948 | 86..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:46 Download gff for
UFO11942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32568-RB | 99..948 | 86..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:31 Download gff for
UFO11942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32568-RB | 99..948 | 86..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:31 Download gff for
UFO11942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16741239..16741429 | 266..456 | 100 | -> | Plus |
| X | 16741524..16741857 | 457..790 | 100 | -> | Plus |
| X | 16741904..16742074 | 791..946 | 91 | <- | Plus |
| X | 16741004..16741183 | 86..265 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:46 Download gff for
UFO11942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16635037..16635216 | 86..265 | 100 | -> | Plus |
| arm_X | 16635272..16635462 | 266..456 | 100 | -> | Plus |
| arm_X | 16635557..16635890 | 457..790 | 100 | -> | Plus |
| arm_X | 16635937..16636107 | 791..946 | 91 | <- | Plus |
