UFO11943.5prime Sequence
1047 bp (887 high quality bases) assembled on 2012-06-29
> UFO11943.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCCAAATCAGC
AAACTAACCCACATAAGCCGCATAAGCCAAAACAATCAGTCGGACGGGAG
TGATGAGGATAAGTTTCGCCGTGCGAATTTTCCGGTTTACCCAAAACCGC
TACCTGATCGAGATTTGAGCTACAAAGCTGACGAAAATGAGTTCACAATG
GTGGAGAAGGCGTCCTTGCGGAATGCCTGGCGTTTAATTGAGCCATTTCA
GCGCCGATTTGGCAAGGAAAATTTTTACAGTTTCCTTACGAGGAACGAGG
ATCTCATAAACTTTTTCAGGAAAGATGGAAAGATTAACCTGAGTAAGCTG
CACGGGCATGCCATGGCAATGATGAAGCTGATGTCAAAGCTGGTCCAAAC
ACTGGATTGCAATCTAGCTTTCCGCTTGGCCTTGGATGAGAATCTTCCCA
CACATCTGAAGAATGGCATCGATCCGGATTATATGAGGATGCTGGCCACC
GCACTGAAGAGTTATATCCTTGCGTCTTCCGTTATCGAAAATCACAACTC
ATGTTCACTAAGCAATGGTCTGGCCCGTCTGGTGGAGATCGTCGGTGAGT
ACGCCGTTGTGGATGAGGCTAGAAAAAGAGCCATGTCCACTGCCCTTAGA
CGACTGTTGACGATGCTGGCATCGCATTGTCAGGTTGCTTTAGCACTGCA
GCTTCTAGACATTCGTTTGGCGCGCGGCCCAGGTAAGTGTCATATCATAA
TCATATCATATCATATCACACTAGCTAGAGTCTGTCTGATATGTGATCCC
ATAAACCCGCGACACTCGCATCGTGATTAGCTATGACTCAAGTCAGACAT
CATACCGCTGACTCAATTGATCTACTCGATGACACAGTGACACCGTCCTG
CTGTATCTGAGGAATCTGCTAATGACCGGGAATCATGCTCACTGTGACGC
GCAATTGAGGCACTGAACGAGTCAACTAATGGTTCAAATGGACCGTC
UFO11943.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| glob2-RB | 823 | CG15180-RB | 77..737 | 86..743 | 3230 | 99.5 | Plus |
| glob2-RC | 2336 | CG15180-RC | 77..635 | 86..644 | 2795 | 100 | Plus |
| glob2-RD | 784 | CG15180-RD | 310..698 | 358..743 | 1840 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6608594..6608838 | 330..86 | 1225 | 100 | Minus |
| 3R | 32079331 | 3R | 6608334..6608543 | 538..329 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 6607999..6608207 | 743..538 | 895 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:49:09 has no hits.
UFO11943.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:59 Download gff for
UFO11943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glob2-RB | 72..742 | 79..747 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:48 Download gff for
UFO11943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glob2-RB | 72..742 | 79..747 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:33 Download gff for
UFO11943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glob2-RB | 72..742 | 79..747 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:33 Download gff for
UFO11943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6607994..6608206 | 539..747 | 98 | <- | Minus |
| 3R | 6608334..6608541 | 331..538 | 100 | <- | Minus |
| 3R | 6608594..6608845 | 78..330 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:48 Download gff for
UFO11943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2433716..2433928 | 539..747 | 98 | <- | Minus |
| arm_3R | 2434056..2434263 | 331..538 | 100 | <- | Minus |
| arm_3R | 2434316..2434567 | 78..330 | 98 | -> | Minus |
