UFO11944.5prime Sequence
1177 bp (1087 high quality bases) assembled on 2012-06-29
> UFO11944.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGAATAACCTGAACGCGA
ATGCCAGTGCCTTTTTGTGGCAGGTACCGCCGCCGCAGCAGTTGACCCCT
CAATCGGTGCAGCAGCAGACGGTGCAGTCGGTGCAGTCCATGCAGTCCGT
GCAACATAGCCAGCTGCTTCAATCCGCTGTAGTCTCGCAGCCGCGCAAGT
TTGGTGGCAACAAGAGCAACTATAACTACATGCAGAATCATGCCATTATG
GGTCCGGGCGGCGGTCCAATGGGTGGGATCGGTGGCAACCCTAACATCTA
CCGAAAGCGCCATTCTATCAACACCTACAATGCTGGCTTATATCAAACCA
ATGGTAAGTCGCTGTTTTCTATACCCGAAAATGTTGTTATGCTTGAGAGC
CAACCACCGCTATTGGGACCCGGAGCCGCTTTCCCACCATTCGGAGCTCC
CGAATATCACACCACCACACCGGAGAACTGGAAGGGGGCCGCCATCCATC
CCACTGGCCTGATGAAGGAGCCCGCTGGTGTTGTGCCCGGACGCAATGCT
CCGGTGGCCTTCACACCGCAAGGACAGGCTCAGGGCGCCGTCATGATGGT
CTACGGCCTGGACCACGACACTTCCAACACGGATAAGCTCTTCAATTTGG
TTTGCCTGTACGGCAACGTGGCACGGATCAAGTTCTTGAAGACCAAAGAG
GGCACCGCCATGGTGCAAATGGGAGACGCTGTGGCCGTTGAGCGTTGCGT
GCAGCACTTGAACAACATTCCCGTGGGCACTGGTGGCAAGATACAGATCG
CTTTCTCCAAACAGAACTTCCTATCCGAGGTGATCAACCCGTTCTTGCTG
CCCGATCATTCGCCCAGCTTCAGGAGTACACCGGCTCCAGACAATCGTTT
CCTATCGCCGGCCCAGGCGAGCAGAATCGCATTCAACCACGAGCAGGATT
TGCACTTTTCACACACCGCCCGGCTTGACCGAGGACCACTGATTGGAATC
TTTAACATCAGGATGGTGCCCGCCACATCGGGTGCGCCTGTTCCCTTGAT
ACCGAGCGCTCGTCGTCGGACTGATCGAAATTTTCCCAATATCTCGCAGG
CATGGCTGCTATACGGTAATGCACATC
UFO11944.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RI | 1831 | CG9218-RI | 301..1381 | 81..1152 | 4955 | 98.2 | Plus |
| sm-RAA | 15139 | CG9218-RA | 1498..2256 | 403..1152 | 3360 | 97.5 | Plus |
| sm-RZ | 2378 | CG9218-RZ | 1170..1928 | 403..1152 | 3360 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19546444..19546771 | 408..81 | 1625 | 99.7 | Minus |
| 2R | 25286936 | 2R | 19532444..19532712 | 990..726 | 1165 | 98.1 | Minus |
| 2R | 25286936 | 2R | 19538029..19538211 | 634..452 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 19537776..19537872 | 726..630 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 19532216..19532358 | 1152..1011 | 330 | 89.7 | Minus |
| 2R | 25286936 | 2R | 19546012..19546060 | 451..403 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:49:12 has no hits.
UFO11944.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:59 Download gff for
UFO11944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RI | 284..1375 | 81..1162 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:51 Download gff for
UFO11944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RI | 301..1392 | 81..1162 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:35 Download gff for
UFO11944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RI | 301..1392 | 81..1162 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:35 Download gff for
UFO11944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19532436..19532711 | 727..997 | 97 | <- | Minus |
| 2R | 19537776..19537868 | 634..726 | 100 | <- | Minus |
| 2R | 19538030..19538211 | 452..633 | 100 | <- | Minus |
| 2R | 19546012..19546059 | 404..451 | 100 | <- | Minus |
| 2R | 19546449..19546771 | 81..403 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:51 Download gff for
UFO11944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15419941..15420216 | 727..997 | 97 | <- | Minus |
| arm_2R | 15425281..15425373 | 634..726 | 100 | <- | Minus |
| arm_2R | 15425535..15425716 | 452..633 | 100 | <- | Minus |
| arm_2R | 15433517..15433564 | 404..451 | 100 | <- | Minus |
| arm_2R | 15433954..15434276 | 81..403 | 99 | <- | Minus |
