UFO11945.5prime Sequence
1141 bp (1009 high quality bases) assembled on 2012-06-29
> UFO11945.5prime
AACTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAA
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGCACGGT
GGAGCCGGTGGCGGTCTGGGAGCTCAAACTGTTGGAGCCGGCCAACTTGG
AGGCGGTGCAGCGGCAGCTGGCGGTGGAGAATACCGCGAACTCCACTGGA
CGGTCTCAAGCGTAATGGACTCGTCTCGGGTCTCCACCTGCCTCATATCA
ATGCTGCTGATAGTCTACGGCAGCTTTCGCTCCTTAAACATCGAGCAGGA
GGCCCGCGAGCGGGAGCAGAAGAAGCGAAATGAATCGATGACCAATCTTC
TTACCGGCGAGCCCGTCGAGAAGGAACCAAATCTGTATTTCACAGCGGAT
AAATTCGCCACTCTGGACACGATGCATGCCCTCTGTTTGCCTCTCGGAGC
TTCCATCTCACTGCTCATCATGTTCTTCTTCTTCGACTCGATGCAGCTGC
TCTTCGCCGTCTGCACAGCGATTATAGCCACCGTGGCGCTGGCCTTTCTG
CTGCTGCCCATGTGCCAGTACATCATCAGGCCATGCACAGATGGAAAGCG
ATTCTCCTTCGGATTCTGCGGTCGCTTCACAGCCGCGGAGCTCTTCAGCT
TTACGCTTTCGGTATCGATTGTGTGCATATGGGTGCTCACTGGCCACTGG
CTGCTAATGGATGCAATGGGCATGGGCCTGTGTGTGGCATTCATAGCGTT
TGTGCGTCTGCCCAGCTTGAAGGTGTCCACGCTGCTGTTGACCGGCCTGC
TCATCTACGACGTCTTCTGGGTATTCCTCTCCTCGTACATCTTCAGCACT
AACGTGATGGTCAAGGTGGCGACGCGACCCGCCGATAATCCCGTGGGCAT
CGTGGCCAGAAAGTTGCATCTGGTGGCATTGTGCGGTACACACCAAAGCT
GATTCTGCCCGAAGCTGTTTCAGCTGCATACGTCCTCCTTGCTGCTGGTG
ATGGGATGCGCTGTGTGTCGCTGCGAGTGTACAAGCAGTCATCGTCATGC
GCAGTGTCGTGATTTCTGCTTGTTTTGCTAGAGACAGTAGCACGCTGTAG
CTATGCTTGAGCTAGCGTGACTGATATGCTATGCCAGTATA
UFO11945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SppL-RE | 2422 | CG17370-RE | 448..1322 | 88..961 | 4260 | 99.2 | Plus |
| SppL-RD | 2782 | CG17370-RD | 649..1523 | 88..961 | 4260 | 99.2 | Plus |
| SppL-RF | 2561 | CG17370-RF | 602..1461 | 88..961 | 4025 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25885537..25885829 | 88..380 | 1435 | 99.3 | Plus |
| 3R | 32079331 | 3R | 25886565..25886814 | 713..961 | 1155 | 98.4 | Plus |
| 3R | 32079331 | 3R | 25886307..25886498 | 522..713 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 25885880..25886020 | 381..521 | 690 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:49:15 has no hits.
UFO11945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:00 Download gff for
UFO11945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17370-RE | 441..1333 | 82..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:53 Download gff for
UFO11945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SppL-RD | 643..1535 | 82..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:37 Download gff for
UFO11945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SppL-RD | 643..1535 | 82..970 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:37 Download gff for
UFO11945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25885531..25885829 | 82..380 | 98 | -> | Plus |
| 3R | 25885880..25886020 | 381..521 | 99 | -> | Plus |
| 3R | 25886307..25886498 | 522..713 | 100 | -> | Plus |
| 3R | 25886566..25886826 | 714..970 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:53 Download gff for
UFO11945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21711253..21711551 | 82..380 | 98 | -> | Plus |
| arm_3R | 21711602..21711742 | 381..521 | 99 | -> | Plus |
| arm_3R | 21712029..21712220 | 522..713 | 100 | -> | Plus |
| arm_3R | 21712288..21712548 | 714..970 | 97 | | Plus |
