UFO11948.5prime Sequence
952 bp (949 high quality bases) assembled on 2012-06-29
> UFO11948.5prime
GAACTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATA
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGTTTGTT
AAAGGAGGAAATTGCCCAGTTTCACGAGCAGTCGCTGGAGAAGTATGATG
GACTGGATCCGCATGATCTGTATGTACTATATAAGAAGCTTCAGATGGAG
CTGGAGCTCATCCAGGTGCAGGAGGATTATATCAAGGAGGAGCAACGCAA
TCTGAAGAAGGAGTTCATACACGCTCAGGAGGAAGTTAAGCGCATAAAAG
CCGTGCCTCTGGTCATTGGCCAGTTTCTGGAGGCGGTGGATGAAAACAAC
GGCATAGTGGCCTCCACCACCGGATCCAATTACTATGTTCGAGTGCTATC
CACCATTGACAGGGAGCAACTGAAGCCGTCCTCTTCGGTTGGGCTGCACA
AGCAAAGCAATTGTCTGGTCGATCTGGTGCCACCGGAGGCGGACAGCACC
ATATCGATGCTATCGCCGGATGAGAAACCGGATATCAGCTACTCCGACAT
TGGAGGCTTGGACATCCAGAAACAGGAGATACGCGAGGCTGTCGAGCTGC
CCTTGACCCACGCCCAGCTTTACAAGCAAATTGGCATCGATCCCCCACGC
GGCGTCCTCCTTTTTGGACCACCTGGATGTGGCAAAACCATGCTGGCCAA
GGCGGTGGCCCATCATACAACTGCATCATTTATTCGTGTCGTGGGCTCCG
AGTTCGTCCAGAAATACCTAGGCGAGGGGCCACGCATGGTGCGAGATCTT
TTCCGCCTGGCCAAGCAGAATTCTCCTTCAATTATCTTCATTGATGAGAT
CGATGCGATTGCCACCAAGCGCTTTGATGCACAGACAGGTGCTGATCGCG
AGGTGCAGCGCATCCTGCTGGAGCTACTCAACCAATGGATGGCTTTGATG
AG
UFO11948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3R-RD | 1414 | CG9475-RD | 34..897 | 90..952 | 4295 | 99.9 | Plus |
| Rpt3R-RC | 1432 | CG9475-RC | 52..915 | 90..952 | 4295 | 99.9 | Plus |
| Rpt3-RB | 1553 | CG16916-RB | 348..1097 | 201..949 | 1535 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9755619..9756163 | 634..90 | 2725 | 100 | Minus |
| 3R | 32079331 | 3R | 9755252..9755572 | 952..633 | 1555 | 99.7 | Minus |
| X | 23542271 | X | 11125580..11126313 | 201..934 | 1525 | 80.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:48:52 has no hits.
UFO11948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:55 Download gff for
UFO11948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RC | 26..900 | 80..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:36 Download gff for
UFO11948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RC | 41..915 | 80..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:20 Download gff for
UFO11948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RC | 41..915 | 80..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:20 Download gff for
UFO11948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9755252..9755571 | 634..952 | 99 | <- | Minus |
| 3R | 9755620..9756174 | 80..633 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:36 Download gff for
UFO11948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5580974..5581293 | 634..952 | 99 | <- | Minus |
| arm_3R | 5581342..5581896 | 80..633 | 99 | | Minus |
