UFO11949.5prime Sequence
915 bp (790 high quality bases) assembled on 2012-06-29
> UFO11949.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCCAAGTCATTGGC
CATGTCTTTTGATCCTGCTTGTTGTAATCGTACTCATCCTAGCTGTTTGC
GGATACTACACAATTATTCACCCGAAACAGATTCATCTGGAAAGCTGTTT
TCTCAAAGGCGGGGCCTGCCGGGAAACGTGGAACTGCGACGAAAGGTACC
GCAGTCGCGTTCGCACCACGTGTATCAACAAACGAAAGGTCTGCTGCATG
CCCACGCTCCAGATAAAGAGCATTCAGGATGCCGAGTACTACATCGAGGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTGC
GCTTCTTATATTGCCTGTGAACGGGCGAGAGTGTCTATGGCCGTAAACAA
AGGGAAACCCCAGGTGTACAATTCCTACTAGAAGAGTCCGAACATGATTG
GATCACCGTCCAGACTCTGAGAGGAGACTCACTCGTTGAACAATCAGGAG
AAGAATGTTTATAGACTAGGAGTGAGAGAGTATGTCGCTCTCATAAATAT
CTAACACCTATCAAC
UFO11949.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34286-RB | 686 | CG34286-RB | 95..358 | 85..348 | 1320 | 100 | Plus |
| CG34286-RA | 520 | CG34286-RA | 95..358 | 85..348 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19715514..19715677 | 348..185 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 19715734..19715833 | 184..85 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:49:27 has no hits.
UFO11949.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:03 Download gff for
UFO11949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34286-RA | 95..368 | 85..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:02 Download gff for
UFO11949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34286-RA | 95..368 | 85..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:43 Download gff for
UFO11949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34286-RA | 95..368 | 85..359 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:43 Download gff for
UFO11949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19715504..19715677 | 185..359 | 97 | <- | Minus |
| 3R | 19715734..19715833 | 85..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:02 Download gff for
UFO11949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15541226..15541399 | 185..359 | 97 | <- | Minus |
| arm_3R | 15541456..15541555 | 85..184 | 100 | | Minus |
