UFO11951.5prime Sequence
1198 bp (1085 high quality bases) assembled on 2012-06-29
> UFO11951.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGCCGGTGGCTGTACGT
CTAGTAGAGGTCTTGACCCTGATCACCATTATGGGTCTAATTACATGCAT
TGGTCTCAGCGTGATTTTGGCCCAAAAGACACTCAGTATGACAATAACAT
TTCTCGAGCCCGCAGCGAATATTGCCAATATGGTGCTAGTTGTAACCGAG
AAAATACTGGTGTCCTCGCTGCTCTGCGTTTTGAGTCTCACAAATGCGGT
GGGAAATGCCCTGCATGTGGCTGGAATCGCCGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATA
TTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGT
TTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAAC
ATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACA
CGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGTAT
TCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTAA
CAAGGGTGAACACTATCCCATATCACCAGCTCACGTCTTCATGCATACGA
AATCGGATGACATCATCAGCGGCAGATGTGATAAGGCGGATAACTTGTGC
TATTTTCTTACGTCTTAAAGCGTATATCAGCTGACGTTGTTTAGTACTGA
CACTGACTGATGCCTCAATGTTCTTACGATGCATGGATATCACGGTGAAT
CAGGATTTCCATAGCTCCTGGTCTGAAGATCTACTCGTAGCTCTTACG
UFO11951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34204-RA | 486 | CG34204-RA | 146..394 | 83..331 | 1245 | 100 | Plus |
| CG34204-RB | 479 | CG34204-RB | 146..387 | 83..331 | 1130 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21796540..21796665 | 83..208 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 21796725..21796849 | 207..331 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:49:29 has no hits.
UFO11951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:03 Download gff for
UFO11951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34204-RA | 81..338 | 73..331 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:04 Download gff for
UFO11951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34204-RA | 137..394 | 73..331 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:45 Download gff for
UFO11951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34204-RA | 137..394 | 73..331 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:45 Download gff for
UFO11951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21796531..21796665 | 73..208 | 97 | -> | Plus |
| 2R | 21796727..21796849 | 209..331 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:04 Download gff for
UFO11951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17684036..17684170 | 73..208 | 97 | -> | Plus |
| arm_2R | 17684232..17684354 | 209..331 | 100 | == | Plus |
