UFO11952.5prime Sequence
1107 bp (1010 high quality bases) assembled on 2012-06-29
> UFO11952.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAGTGCAGA
AGACGGCGAGCTGGATCCCCAAATTCAGATTGAACTGGAGAATCTCAATA
GTGCAACCGATGAGATTAATAAGCTAGAAATCGAGCTAGAGGAGGCTAAT
TCCACCTTTCGCATCCTGTTAAATGAATCTACACGCCGCCTTAAAGTTTC
CTCCAAAAAGTTGGGCAACTGCATAGAGAAGGCTAGACCCTACTACGAGG
CATTGGACAAGGCACGCGAGGCACAAATCGAATGCCAAAAAGCAGCGGTT
AAGTTCCAGCGAGCTAATGAAATCCATGCCGCAGCCAAGGAGACGGTGGC
GCTTGCTGAGCAGCGTTTTATGTCCAACTCGCACGAATGGCAGTTCGACA
ATGCCTGGCAGGAGATGCTTAACCATGCTACCCAGAAGGTGATGGATGCC
GAAACGCAGAAAGCCGACTGTCATGCTGAGCACCAGAGGCTCACCAAACT
TTTTAACGCCGCCGAGCAAAAGCTGCAACAGCTTGAGGATCGTTTTCGTC
GTAGCATCAACAAGTCACGCCCGTACTTCGAAGAGAAGCAGGTGTGTCAG
GATCAGCTGCAGACACAAAAAAACCGCATTCAGGAGCTGCAGCAGCAGGT
GGCCGGTGCTAAGAGCACCTACTCCACGGCCTTACGCAATCTGGAGAGGA
TCAGTGAGGATATACATAGGCAGAGGGGAGATTTTCCCACTCCACCAGGA
CCCCGCGAGCCGGGTGTGGGAGCAGAGTTAAACTCTCCGACTTCCAGTGC
CTTGCCATCACTGCCCGATTTCCAGCTGGAGCTTGAGAAGTGCGACTATC
CCTCCATAGCGGGCAGCCAGATGTCTTTGGGCGCAAAAACTCCCAGCAGC
TGCGAAACTGAGATGAGAGATGCTGCGACTACGATGAACGGGAGCGGGGA
GCTCAGAGGTGTATGATGACGCGATTTGAGGCGCTGCCACGGAGTCAGAT
CTTGCGTGCGTCCATCAAGCGAATGACGCACAGACGATGGTGTACTGAAC
TGAGGCA
UFO11952.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pcs-RB | 2216 | CG7761-RB | 520..1483 | 87..1037 | 4515 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14989922..14990575 | 369..1013 | 2890 | 98.6 | Plus |
| 2R | 25286936 | 2R | 14989680..14989859 | 190..369 | 900 | 100 | Plus |
| 2R | 25286936 | 2R | 14989548..14989616 | 124..192 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 14981782..14981823 | 87..128 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:49:32 has no hits.
UFO11952.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:04 Download gff for
UFO11952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcs-RB | 498..1475 | 79..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:06 Download gff for
UFO11952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcs-RB | 512..1489 | 79..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:47 Download gff for
UFO11952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcs-RB | 512..1489 | 79..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:47 Download gff for
UFO11952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14981774..14981823 | 79..128 | 94 | -> | Plus |
| 2R | 14989553..14989619 | 129..194 | 97 | -> | Plus |
| 2R | 14989685..14989859 | 195..369 | 100 | -> | Plus |
| 2R | 14989923..14990609 | 370..1043 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:06 Download gff for
UFO11952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10869279..10869328 | 79..128 | 94 | -> | Plus |
| arm_2R | 10877058..10877124 | 129..194 | 97 | -> | Plus |
| arm_2R | 10877190..10877364 | 195..369 | 100 | -> | Plus |
| arm_2R | 10877428..10878114 | 370..1043 | 97 | | Plus |
