UFO11953.5prime Sequence
1186 bp (1062 high quality bases) assembled on 2012-06-29
> UFO11953.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGAAACTAAAGCTGG
CTTAAGTGCGCTGGAGGAAAGGTCCCTGAAAGGTTCAGAGAAACTTAAAA
TGCTGGACATCACTCGCGACAAGCCGGTGAAGGTGGCCGTCAAAGTGGCC
GTTCCTGTGCGGGATCACCCAAAGTTCAATTTCGTGGGCAAGCTGCTCGG
ACCCAAGGGCAACTCGATGAAGCGCCTGCAGGAGGACACCATGTGCAAGA
TGGCCGTTCTGGGACGCGGATCGATGCGAGACCGGCGGAAGGAGGAGGAG
CTGCGGGGCAGTGGCGACAGTCGCTACGCCCATCTCTTCGAGGACCTGCA
CGTCGAGATCTCGACCTTCGCCGCTCCGGCGGAGGCCCATGCTCGGATAG
CCTACGCTCTGGCGGAAGTGCGCCGCTTTCTGGTTCCGGACTACCACGAT
GACATCCGCCAGGAGCAAATGTGGGAAATGCAGGCGCTGACGTCCACGCC
CGCACTGGGTGCCCACTCGCTGGAGGATTCGCATAGCCCTACCATCAACA
GCAGTAGCCAGGTGGGCGGCACCACCAACTCCTCCTCCAACGGGGCCAGT
GGGCGTGGCCTGGGCGGCGGACTAGCCGACATGGACACGTCCAACGATGA
CAAATCGGACGACGCCAGCGGCATGGAGTGCCTGTCGGCAGTCGACAAGC
TTGACTGCTCGTCCAGCTGCGCCAGTCTGGGCATCAGTGGCATCACCACC
ATCAGCACCACCAGCCCCGAGCATCCGCATCCGCACCAGCACCACCAGCA
GCACCAACAGCACCAACAGCACCACGCCCACCTGCACCCAGCACACGCCC
ATGGAAACCAGCAGCAGCAGCAGCAGGTCCAGCACCACCACAGCCACCAG
CGCACTTCCACCAGCTCCTGCAGCAGGCTCACGGTGGAGCCAGTGCCGCA
GCGGCTGCCTGCGGGGGAGCATTTTCTTCTGGACAGACGACTCCGGCGAC
GGCGGCGGCATTGCCCCACCACAGGCATGCAGTGCCCTCCAGCATCAGCT
CACAGCCGCAGATCGTAGGACTCCTGAGCCGGCACCGGATGGGGGCACCA
TGCGGCTGCCCACACCAGCGGAAGCGCGCCCTTTCA
UFO11953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10384-RE | 3849 | CG10384-RE | 753..1840 | 84..1163 | 5005 | 98.1 | Plus |
CG10384-RD | 2509 | CG10384-RD | 753..1840 | 84..1163 | 5005 | 98.1 | Plus |
qkr58E-1-RD | 1902 | CG3613-RD | 494..629 | 217..352 | 245 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22469585..22470156 | 488..1061 | 2680 | 99 | Plus |
2R | 25286936 | 2R | 22466682..22466948 | 223..489 | 1335 | 100 | Plus |
2R | 25286936 | 2R | 22466475..22466563 | 136..224 | 445 | 100 | Plus |
2R | 25286936 | 2R | 22460092..22460146 | 84..138 | 275 | 100 | Plus |
2R | 25286936 | 2R | 22414825..22414960 | 352..217 | 245 | 78.7 | Minus |
2R | 25286936 | 2R | 17471170..17471264 | 223..317 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:49:35 has no hits.
UFO11953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:05 Download gff for
UFO11953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10384-RC | 1..1004 | 150..1148 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:07 Download gff for
UFO11953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10384-RD | 750..1822 | 77..1148 | 97 | <- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:48 Download gff for
UFO11953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10384-RD | 750..1822 | 77..1148 | 97 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:48 Download gff for
UFO11953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22460089..22460146 | 77..138 | 93 | -> | Plus |
2R | 22466478..22466563 | 139..224 | 100 | -> | Plus |
2R | 22466684..22466947 | 225..488 | 100 | -> | Plus |
2R | 22469586..22470156 | 489..1061 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:07 Download gff for
UFO11953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18347594..18347651 | 77..138 | 93 | -> | Plus |
arm_2R | 18353983..18354068 | 139..224 | 100 | -> | Plus |
arm_2R | 18354189..18354452 | 225..488 | 100 | -> | Plus |
arm_2R | 18357091..18357661 | 489..1061 | 99 | -> | Plus |