Clone UFO11953 Report

Search the DGRC for UFO11953

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:119
Well:53
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG10384-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11953.5prime Sequence

1186 bp (1062 high quality bases) assembled on 2012-06-29

> UFO11953.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGAAACTAAAGCTGG
CTTAAGTGCGCTGGAGGAAAGGTCCCTGAAAGGTTCAGAGAAACTTAAAA
TGCTGGACATCACTCGCGACAAGCCGGTGAAGGTGGCCGTCAAAGTGGCC
GTTCCTGTGCGGGATCACCCAAAGTTCAATTTCGTGGGCAAGCTGCTCGG
ACCCAAGGGCAACTCGATGAAGCGCCTGCAGGAGGACACCATGTGCAAGA
TGGCCGTTCTGGGACGCGGATCGATGCGAGACCGGCGGAAGGAGGAGGAG
CTGCGGGGCAGTGGCGACAGTCGCTACGCCCATCTCTTCGAGGACCTGCA
CGTCGAGATCTCGACCTTCGCCGCTCCGGCGGAGGCCCATGCTCGGATAG
CCTACGCTCTGGCGGAAGTGCGCCGCTTTCTGGTTCCGGACTACCACGAT
GACATCCGCCAGGAGCAAATGTGGGAAATGCAGGCGCTGACGTCCACGCC
CGCACTGGGTGCCCACTCGCTGGAGGATTCGCATAGCCCTACCATCAACA
GCAGTAGCCAGGTGGGCGGCACCACCAACTCCTCCTCCAACGGGGCCAGT
GGGCGTGGCCTGGGCGGCGGACTAGCCGACATGGACACGTCCAACGATGA
CAAATCGGACGACGCCAGCGGCATGGAGTGCCTGTCGGCAGTCGACAAGC
TTGACTGCTCGTCCAGCTGCGCCAGTCTGGGCATCAGTGGCATCACCACC
ATCAGCACCACCAGCCCCGAGCATCCGCATCCGCACCAGCACCACCAGCA
GCACCAACAGCACCAACAGCACCACGCCCACCTGCACCCAGCACACGCCC
ATGGAAACCAGCAGCAGCAGCAGCAGGTCCAGCACCACCACAGCCACCAG
CGCACTTCCACCAGCTCCTGCAGCAGGCTCACGGTGGAGCCAGTGCCGCA
GCGGCTGCCTGCGGGGGAGCATTTTCTTCTGGACAGACGACTCCGGCGAC
GGCGGCGGCATTGCCCCACCACAGGCATGCAGTGCCCTCCAGCATCAGCT
CACAGCCGCAGATCGTAGGACTCCTGAGCCGGCACCGGATGGGGGCACCA
TGCGGCTGCCCACACCAGCGGAAGCGCGCCCTTTCA

UFO11953.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10384-RE 3849 CG10384-RE 753..1840 84..1163 5005 98.1 Plus
CG10384-RD 2509 CG10384-RD 753..1840 84..1163 5005 98.1 Plus
qkr58E-1-RD 1902 CG3613-RD 494..629 217..352 245 79.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22469585..22470156 488..1061 2680 99 Plus
2R 25286936 2R 22466682..22466948 223..489 1335 100 Plus
2R 25286936 2R 22466475..22466563 136..224 445 100 Plus
2R 25286936 2R 22460092..22460146 84..138 275 100 Plus
2R 25286936 2R 22414825..22414960 352..217 245 78.7 Minus
2R 25286936 2R 17471170..17471264 223..317 190 80 Plus
Blast to na_te.dros performed on 2014-11-28 17:49:35 has no hits.

UFO11953.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:05 Download gff for UFO11953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10384-RC 1..1004 150..1148 98 <- Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:07 Download gff for UFO11953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10384-RD 750..1822 77..1148 97 <- Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:48 Download gff for UFO11953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10384-RD 750..1822 77..1148 97 <- Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:48 Download gff for UFO11953.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22460089..22460146 77..138 93 -> Plus
2R 22466478..22466563 139..224 100 -> Plus
2R 22466684..22466947 225..488 100 -> Plus
2R 22469586..22470156 489..1061 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:07 Download gff for UFO11953.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18347594..18347651 77..138 93 -> Plus
arm_2R 18353983..18354068 139..224 100 -> Plus
arm_2R 18354189..18354452 225..488 100 -> Plus
arm_2R 18357091..18357661 489..1061 99 -> Plus