UFO11955.5prime Sequence
1148 bp (1047 high quality bases) assembled on 2012-06-29
> UFO11955.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCAATTTGCGGC
GCCAGGTTCTCAGTGCTTTCAAGAAGCTCCACCGTACACGACAATACGTT
TTTCAGGGGGATGCCAATGCTTTGGCGGCGGGACGACTAAAAATCAACGA
ATCTTTCCTGCAGAATCGTAATGAAAGCAGCGAGGATGAAATTCAAAAGA
TGATCAAGCTGGCGCAGGACGTGGATTTGGAGCTGCGAACGAATGTCATC
CAAGCCCAGAAAAAAGAGGATGGTGTTTATGAACTAAGGATCACGCCAGA
GACAACGCGACTCGACAATGTGGTCTTTAATCCTGACGCAATTATCGAAA
AACCGCGCAGGCAACGCGGCGACAAAAACACTGAAGGTTGCTGCGGTGGC
GCTGCGATGGCGGCGCTGGAAGCCGAAGTCCAGGCCCGCAACAAAGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAAAGTTGTCC
ATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGC
TGAGACGAAAACATATTCTCATAAACCCTTTAGGAATAGCCAGTTTTCAC
CGTACACGCCACATCTGCGAATATATGTGTAGAACTGCCGGAAATCGTCT
GCATTCACTCCAGAGCGATGAAACGTTCAGTTTGCTCACGGAACCGTGTA
ACAAGTGACACTATCCCATATCACAGCTCACGGTCTCCATGCCTACGA
UFO11955.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34150-RB | 495 | CG34150-RB | 16..426 | 85..495 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24814697..24814861 | 331..495 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 24814345..24814492 | 102..249 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 24814551..24814634 | 248..331 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:49:41 has no hits.
UFO11955.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:06 Download gff for
UFO11955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34150-RB | 16..429 | 85..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:11 Download gff for
UFO11955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34150-RB | 16..429 | 85..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:51 Download gff for
UFO11955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34150-RB | 16..429 | 85..499 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:51 Download gff for
UFO11955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24814277..24814297 | 85..105 | 100 | -> | Plus |
| 3R | 24814349..24814492 | 106..249 | 100 | -> | Plus |
| 3R | 24814553..24814634 | 250..331 | 100 | -> | Plus |
| 3R | 24814698..24814861 | 332..495 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:11 Download gff for
UFO11955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20639999..20640019 | 85..105 | 100 | -> | Plus |
| arm_3R | 20640071..20640214 | 106..249 | 100 | -> | Plus |
| arm_3R | 20640275..20640356 | 250..331 | 100 | -> | Plus |
| arm_3R | 20640420..20640583 | 332..495 | 100 | == | Plus |
