UFO11956.5prime Sequence
1142 bp (1045 high quality bases) assembled on 2012-06-29
> UFO11956.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGGCGTCTGCACCGA
GGAGCGCCCTGTGATGCATTGGCAGAGCGCAAGATTTCTTGGGCCCGGCG
CAAGGGAGAAAAGTCCAACACCACCTGTAGCACATCAAGGGAGCAATCAA
TGTGGCAGTGCTGCAGGTGCAAATAACAATCACCCATTGTTCCGCGCGTG
CTCCTCATCCTCGTGTCCAGATATTTGTGATCATAGTACAAAGCCATTTG
GCAACGCTTACGGCACCGAGTCATTTAGAAGCTACGAAACAGCCGATCGT
GCTACCTTTGAGGACTCAGCCGCCAAATTCTCCATCAGCCGCAGTCGAAC
AGACTGCACGGAGGTCAGCGACGAGACGACGTCGGGCATATCATTCAAGA
CCGAACCCTTCGGACCGCCCAGCAGTCCCGAGTCCACAAGCGATAGCAAA
ATAACGCGCAACCTCGACGACTGCTCCGGCTGCGGACGTCAGATACAGGA
TCGCTTCTACCTCTCCGCTGTGGAAAAACGGTGGCATGCAAGTTGCCTAC
AGTGCTACGCCTGTCGGCAGCCGCTGGAACGGGAATCCTCATGCTACTCA
CGTGACGGCAACATTTATTGCAAAAACGATTATTATAGTTTTTTTGGTAC
TCGCCGATGCTCGCGCTGCCTGGCCTCCATCAGCTCCAACGAGCTGGTCA
TGCGCGCCAGAAATCTTGTTTTTCACGTCAACTGCTTCTGCTGCACTGTC
TGCCACACGCCACTGACAAAGGGAGACCAGTACGGCATCATCGACGCCCT
CATCTACTGCAGGACCCACTACAGCATAGCCAGGGAGGGGGATACCGCCT
CATCCAGTATGAGCGCCACCTACCCGTACAGCGCCCAGTTCGGCTCACCC
CACACGACTCCTCGAGCCCGCACTCGGACCCTAGTCGGAGCATTGTTCCT
ACGGGCATCTTTTGTGCCGCGTCCCACGTAATCACGGACTGCCGCAGCAG
CTCGTCAAGGGCAAGCCCGCAGCGCAGCCAGACTCAGGGTTCACCGCCAA
ATAGATTCCAACTGATACTGGACTGCGAGCCGCACTAGCTTC
UFO11956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ap-RC | 3089 | CG8376-RC | 972..1963 | 82..1068 | 4785 | 99.2 | Plus |
| ap-RA | 4114 | CG8376-RA | 972..1966 | 82..1068 | 4745 | 98.9 | Plus |
| ap-RE | 2149 | CG8376-RE | 73..1023 | 123..1068 | 4580 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5717281..5717500 | 549..330 | 1100 | 100 | Minus |
| 2R | 25286936 | 2R | 5717555..5717764 | 331..122 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 5708925..5709105 | 863..683 | 890 | 99.4 | Minus |
| 2R | 25286936 | 2R | 5708669..5708869 | 1058..861 | 795 | 96.5 | Minus |
| 2R | 25286936 | 2R | 5716649..5716790 | 688..547 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 5725821..5725861 | 122..82 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:49:44 has no hits.
UFO11956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:06 Download gff for
UFO11956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RC | 964..1965 | 77..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:14 Download gff for
UFO11956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RC | 966..1967 | 77..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:53 Download gff for
UFO11956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RC | 966..1967 | 77..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:53 Download gff for
UFO11956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5708695..5708867 | 863..1034 | 98 | <- | Minus |
| 2R | 5708926..5709099 | 689..862 | 100 | <- | Minus |
| 2R | 5716649..5716788 | 549..688 | 100 | <- | Minus |
| 2R | 5717282..5717498 | 332..548 | 100 | <- | Minus |
| 2R | 5717555..5717763 | 123..331 | 100 | <- | Minus |
| 2R | 5725821..5725867 | 77..122 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:14 Download gff for
UFO11956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1596431..1596604 | 689..862 | 100 | <- | Minus |
| arm_2R | 1604154..1604293 | 549..688 | 100 | <- | Minus |
| arm_2R | 1596200..1596372 | 863..1034 | 98 | <- | Minus |
| arm_2R | 1604787..1605003 | 332..548 | 100 | <- | Minus |
| arm_2R | 1605060..1605268 | 123..331 | 100 | <- | Minus |
| arm_2R | 1613326..1613372 | 77..122 | 95 | | Minus |
