UFO11957.5prime Sequence
1175 bp (1039 high quality bases) assembled on 2012-06-29
> UFO11957.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGTCTGCACCGCTAGA
GAACCTTGAGACCCAGCTAGAGATGTTCATCGAGAATGTTCGTCAGATCC
GCATAATCGTAAGCGATTTTCAGCCACAGGGTCAAAATGTACTCAACCAG
AAAATTAACAGCTTGGTGACCGGCCTACAAGAGATCGACAAGCTGCGCTC
CCAGGTGCAGGACGTCTATGTGCCATTTGAAGTGTTTTTTGACTACATCG
ACCAAGACAAGAATCCTCAGCTGTACACCAAGGATTGCGTGGAGAAGGCA
CTGGCCAAGAACGAGGAGGTCAAGGGCAAGATCGAGGGCCTGAAGAAGTT
CAAAACGAATCTGCTGCTGGAGCTGTATAAAACATTTCCCAATGAGATGA
ACAACTACCGCGCTTATCGCAAGGACTCCATGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACG
TTTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACA
TATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTCACCGTAACACG
CACATCTTGCGAAAATATGTGTAGAACTGCGGAAATCGTCGTGCTATTCC
CTCCAAAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAAAC
AGGGTGAACACCTATCCCATATCACCCAGCCTCACCGTCTTTCATGCATA
CGAAGTCGGAGTAGAACCATCTCAA
UFO11957.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED10-RB | 597 | CG5057-RB | 119..517 | 84..482 | 1995 | 100 | Plus |
| MED10-RC | 638 | CG5057-RC | 119..517 | 84..482 | 1995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16232380..16232656 | 206..482 | 1385 | 100 | Plus |
| 3L | 28110227 | 3L | 16232202..16232323 | 84..205 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:49:46 has no hits.
UFO11957.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:07 Download gff for
UFO11957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED10-RB | 174..576 | 84..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:15 Download gff for
UFO11957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED10-RC | 119..521 | 84..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:54 Download gff for
UFO11957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED10-RC | 119..521 | 84..487 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:54 Download gff for
UFO11957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16232202..16232323 | 84..205 | 100 | -> | Plus |
| 3L | 16232380..16232656 | 206..482 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:15 Download gff for
UFO11957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16225302..16225423 | 84..205 | 100 | -> | Plus |
| arm_3L | 16225480..16225756 | 206..482 | 100 | == | Plus |
