UFO11959.5prime Sequence
1192 bp (1085 high quality bases) assembled on 2012-06-29
> UFO11959.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCACCCACGGA
AGGCAGTTGCGACACCAGCAACACTTCAACTTGGCCCACCAGCACAAACA
GCACAAAGCCCGGCAGCAACATTGCGGCACAGCAGAACAGCCTCAAGTTC
AAGGCGGCTATCGTTAATCAGATGTTTTATATCCTGCCACACGTTCAACT
TGTTCCTGCTGCTTCTCCTGTTGGCCAGCGGAGTCCGTGCTGCCAGCAAG
CTGGCCACTCGGAGCAACAAAACATCGGGCTCATCGACAGCATCGGGAGT
CGGAGCCGGAACAGCGGCAACTTCGGCAGCGGCGGCGGCAGCGTCAGGAA
CACCCATTTGGGATCATGCCATCGATTTGAATGACGATTTTCGCATACTA
TGGCAAATCATTAATCAGGATATAACATTTGAAATACAGGCACGTACCCT
GGGCTACGTCGGGTTCGGATTCTCGCCCGATGGCAATCTGGCTGGTGCCG
ATATGGCCATCGGCTGGGTGGACAAGGGTCAAACCTATTTTCAGGATCGA
CACGTCACACGGAATGGAGACCCCGAACCGGTGGTGGATCCCTCGCAGGA
TTATATGCTGATGCTGGGCTACGAGAACGCGACCCACACGGTCCTCCGCT
TCCGACGCAAACTGGACACATGCGACCCCAGCCACGACATCGCCATCACG
AACGACACGATGCGCCTGCTGTACATGTATCACGCCCAGGATCCGCCGCA
CGGCTCGGTGCGTCCTGCACCCTTCCGGATCCGGCCCGCGCCTTCCGCCC
CTACCGCCCCATGGTCCTCATGCAGCGCGCCCAGCTGCCGATGCCCTCAC
CCACGCACGACGAGCGCGTGCGAGTCCTCGAGCTGCGCAACGAGGATGTG
GAGCTGCCCGCCGGCGACCTACCGCTCTTCTGGTGCAGATGTTCAAGCTG
GAGGACATCAATCGCAGCACCACCTGATCCGGTACGAGCCGATTATGATC
ATCGTCAGCGGGCACTACTGCAGCACATAACGCTGCACGAGTGCCAGGGT
GCCCACGCGGAGCTGGAGGAAATGGCACGCGAGCAGGCCGCCCGGGTCTC
GGATCGATCATCCGTGCATGCACGCCATCTGGCTCTGGTCCC
UFO11959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf413-RC | 8353 | CG12673-RC | 1028..2104 | 85..1153 | 5110 | 98.8 | Plus |
| olf413-RB | 3443 | CG12673-RB | 1028..2104 | 85..1153 | 5110 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22184093..22184603 | 85..595 | 2555 | 100 | Plus |
| 3L | 28110227 | 3L | 22221699..22221984 | 750..1032 | 1265 | 98.6 | Plus |
| 3L | 28110227 | 3L | 22206827..22206985 | 592..750 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 22222514..22222613 | 1056..1153 | 340 | 94 | Plus |
Blast to na_te.dros performed 2014-11-28 17:49:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 8329..8363 | 375..409 | 112 | 80 | Plus |
UFO11959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:01 Download gff for
UFO11959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf413-RB | 995..2078 | 76..1153 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:58 Download gff for
UFO11959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf413-RB | 1021..2104 | 76..1153 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:41 Download gff for
UFO11959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf413-RB | 1021..2104 | 76..1153 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:41 Download gff for
UFO11959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22184086..22184602 | 76..594 | 99 | -> | Plus |
| 3L | 22206830..22206985 | 595..750 | 100 | -> | Plus |
| 3L | 22221700..22221984 | 751..1032 | 98 | -> | Plus |
| 3L | 22222488..22222613 | 1033..1153 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:58 Download gff for
UFO11959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22177186..22177702 | 76..594 | 99 | -> | Plus |
| arm_3L | 22199930..22200085 | 595..750 | 100 | -> | Plus |
| arm_3L | 22214800..22215084 | 751..1032 | 98 | -> | Plus |
| arm_3L | 22215588..22215713 | 1033..1153 | 92 | | Plus |
