UFO11960.5prime Sequence
1162 bp (1031 high quality bases) assembled on 2012-06-29
> UFO11960.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGCCCTACAACGGCGCT
AGTAATGGCAGTGGCGCCAGTGGCGCCGGCGGAGGAGGGGCAACCATAGT
CGTCACCGAGGGGCCGCAAAACAAAAAGATCCGCACCGGAGTCCAGCAGC
CCGGGGAGAACGATGTGCACATGCATGCTAGGTCCACACCACAACAGAAC
CAGCAGCAAGCACTTATGAACAAGTCAAATGACGACCTACGGAGAAAGCG
TCCCGAGACTACACGGCCAAATCACATTCTTCTCTTCACCATCATAAATC
CCTTCTATCCCATCACAGTTGATGTCTTGCACAAAATCTGTCATCCACAT
GGCCAAGTGCTTCGCATTGTCATATTCAAAAAGAATGGGGTCCAGGCCAT
GGTCGAGTTCGATAATCTGGATGCGGCCACTAGGGCTCGCGAGAATCTGA
ATGGAGCCGACATTTATGCCGGATGCTGCACTCTGAAAATCGATTATGCC
AAGCCGGAGAAATTGAACGTGTACAAGAATGAGCCCGATACCAGCTGGGA
CTATACGCTGAGCACAGGTGAGATTCTACCAAAACCACCGCTATTGGGAC
CCGGAGCCGCTTTCCCACCATTCGGAGCTCCCGAATATCACACCACCACA
CCGGAGAACTGGAAGGGGCCGCCATCCATCCCACTGGCCTGATGAAGGAG
CCCGCTGGTGTTGTGCCCGGACGCAATGCTCCGGTGGCCTTCACACCGCA
AGGACAGGCTCAGGCGCCGTCATGATGGTCTACGGCCTGACCACGACACT
TCCAACACGGATAAGCTCTTCAATTTGGTTTGCCTGTACGGCAACGTGGC
ACGGATCAAGTTCTTGAAGACCAAGAGGGCACCGCCATGGTGCAAATGGG
GAGACGCTGTGGCCGTTGAGCGTTGCGTGCAGCACTTGAACAACATTCCC
GTGGGCACTGGTGGCAAGATAAGATCGCTTTCTCTACAGAACTTCCTATC
GAGGTGATCACCCGTCTTGCTGCCGATCATTCGCCAGCTTCAGGATTAAC
CGGTCGGAACATCGTTCCTTCGCACAAGCGAGCAGATCGCATCACACGAC
AGATTGGCTTTT
UFO11960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RH | 3010 | CG9218-RH | 913..1933 | 83..1092 | 4780 | 98.6 | Plus |
| sm-RP | 2872 | CG9218-RP | 1063..1795 | 371..1092 | 3340 | 98.1 | Plus |
| sm-RV | 3190 | CG9218-RV | 913..1462 | 83..632 | 2750 | 100 | Plus |
| sm-RP | 2872 | CG9218-RP | 913..1062 | 83..232 | 750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19574144..19574326 | 553..371 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 19538029..19538211 | 814..633 | 865 | 99.5 | Minus |
| 2R | 25286936 | 2R | 19628481..19628630 | 232..83 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 19600881..19601020 | 371..232 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 19532552..19532712 | 1060..904 | 530 | 95.7 | Minus |
| 2R | 25286936 | 2R | 19537776..19537868 | 904..813 | 415 | 98.9 | Minus |
| 2R | 25286936 | 2R | 19573988..19574068 | 632..552 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:49:24 has no hits.
UFO11960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:02 Download gff for
UFO11960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RH | 906..1939 | 83..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:00 Download gff for
UFO11960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RH | 913..1946 | 83..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:42 Download gff for
UFO11960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RH | 913..1946 | 83..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:42 Download gff for
UFO11960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19532503..19532711 | 905..1103 | 93 | <- | Minus |
| 2R | 19537776..19537868 | 814..904 | 97 | <- | Minus |
| 2R | 19538030..19538211 | 633..813 | 99 | <- | Minus |
| 2R | 19573988..19574066 | 554..632 | 100 | <- | Minus |
| 2R | 19574144..19574326 | 371..553 | 100 | <- | Minus |
| 2R | 19600882..19601019 | 233..370 | 100 | <- | Minus |
| 2R | 19628481..19628629 | 84..232 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:00 Download gff for
UFO11960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15488387..15488524 | 233..370 | 100 | <- | Minus |
| arm_2R | 15420008..15420216 | 905..1103 | 93 | <- | Minus |
| arm_2R | 15425281..15425373 | 814..904 | 97 | <- | Minus |
| arm_2R | 15425535..15425716 | 633..813 | 99 | <- | Minus |
| arm_2R | 15461493..15461571 | 554..632 | 100 | <- | Minus |
| arm_2R | 15461649..15461831 | 371..553 | 100 | <- | Minus |
| arm_2R | 15515986..15516134 | 84..232 | 100 | <- | Minus |
