UFO11962.5prime Sequence
1142 bp (1033 high quality bases) assembled on 2012-06-29
> UFO11962.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAATCGCACCAC
TGATCAATAACGCCGTCGCTGTCGTCACAGCCTCTGCCTCTGCCGCCGTC
TCTGCCTCTGCTAGCGTCGGCAGTAGCAGCAAGGATGATAACGTCAACAA
TCTAGCGTTGCTCGCGTCGCTGACTTTACAAAAAGTGCTAAATATCAACA
ATAACAATAACCAGCACAGCAAGAACAACAACCACAGCGACAATAGCAAT
AGCAAACAACACGAGCAACAAAAACAGCAGCAGCAACCACAACGACGAAA
CCTCGACATTAAAAGCGAGTATGATGTACTAAACCAATTGCTAAAAACTG
GAGCTGTTTTCACCGCCACGCCCACAGCGCCAATTGCCATCGAAAGGAGG
AAGCAGACGCAGCAGCAGCAACGTCCATATGCACAACAGGCACATCAACA
GCAGCAGCAGAAGCAACGCCTAAACTCATCCATATCATCGACCCACTCAT
CGACATCGACAAACTCCTCCTACGGCAGCTCATCATCGGAGGATGCTGCA
GGCACATCTGCGCCAACGGGAGCAGGTGAAGTTGTCACATCAGCAGCATT
AACACCAAGAGCAAGCACCACGAAGGCGTCCAGCAATAAATTGCCAGAGA
AATCGAAAATTCCGTCCGATATACTTGATGATCTGGCCAGTCGATTTATA
ATCAATGTTCCGGACATGGAGCTAAACAATCTAATACGTATGTGTTTCCA
AATCGAACTGGCCCATTGGTTCTATTTGGATTTCTTTTGTGCCCCCGAAT
CTGGCGAGGATGGCGAGACCCCGAAGTGCGTGCAACGAAAGCTGCCATCG
GTGGGCATCAAGCAGTTTGCCATGCAGTTGTTCCACACATTCCCTTCCTG
ACAAACATTTTGGCACCGTGATCAATCCTGACGAGTCAGACTACAGCTAT
CGGTGCCACTATGGCGCTATTCTGTGTCCGAGATCACATCACTGCTGCTA
GTGCAGTCTACTCGCGCGCCACTCCTGGGGAATTTCCAGGCAAGATCCAT
GAAATCGTAGACCTAGTCATTGTCCACTGATAGGTTAGAGGA
UFO11962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP2-RE | 5934 | CG6169-RE | 845..1892 | 85..1113 | 4665 | 97.4 | Plus |
| DCP2-RA | 3665 | CG6169-RA | 845..1892 | 85..1113 | 4665 | 97.4 | Plus |
| DCP2-RB | 2850 | CG6169-RB | 137..1077 | 192..1113 | 4130 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15823248..15823990 | 935..193 | 3715 | 100 | Minus |
| 3L | 28110227 | 3L | 15825471..15825579 | 193..85 | 545 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 17:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsub\SGM | 823 | Dsub\SGM SGM 823bp Derived from AF043638. | 580..638 | 117..174 | 130 | 71.2 | Plus |
UFO11962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:10 Download gff for
UFO11962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp2-RE | 842..1878 | 85..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:23 Download gff for
UFO11962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp2-RA | 845..1881 | 85..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:59 Download gff for
UFO11962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DCP2-RA | 845..1881 | 85..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:59 Download gff for
UFO11962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15823247..15823989 | 194..935 | 99 | <- | Minus |
| 3L | 15825471..15825579 | 85..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:23 Download gff for
UFO11962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15816347..15817089 | 194..935 | 99 | <- | Minus |
| arm_3L | 15818571..15818679 | 85..193 | 100 | | Minus |
