UFO11963.5prime Sequence
1164 bp (1084 high quality bases) assembled on 2012-06-29
> UFO11963.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAACATCCCCATCT
ACCAAGTGCCCTCGGTGACCATGCAGTCGCTGCACCAGCAATCTTTGTAC
CAGCAAACCTATTTGGATCGCAATCGCATGGTCACCGATGTATTTGTGCA
GGAACACGTCTCGCAGAGCTCTTGGTCAATGGCCGGTTCATCGGCTGTTT
TTATACCAGGCCCCATTATAACTGGTAGTGCCCATGGACACTGCCATCAT
ACCGCGACAGTTTCGACTGTAAGTCCTCAATTAGCGACCTTTATGCCTTT
TCCGGGCATGCAGTACTATGCGGCAAGCTCAGCCACGATGAACGCCTATG
GCCATAATCAGATGTATTCTACTCGTGCTTCGGCCTCCGTCGGCTTCTAT
TTGCCACAGTACCATGCAAGCTGCAGTCATGAACAGCCGAAAAAGACGTT
CTGTGCGGCTCAAACGCAGACCCAGCAGACGGCTAAGACCAGTTGCGATG
TGGGCACCCAGGTGGATTTGGATGCTGAAGAATTGCGCTCGGAGGCTAGG
AAGCCAAGACCAGAAAGTGTTGTTCCTGAAGAATCGAGCATTAGTTCATT
GGAAAGCGGCGCAGGCGATGGTTTCCGAGTGCAAAAAAAGCTGCGCAACT
CGGAGGTAAAGCTGCTGGACCAGCGTCTCCATGATATTACCAGAGTTTCA
CTTCATGGCAGTGAGATAGCCGAACGTCTGGCCAATGCCCATCGCAATCG
TCCGTGCTTCAAGAAGATCGATACACTGTGCGCCCGCCTGAAGCACGATC
TGCTGCGTCCGGATGGCGTGCTGCCAAATATAAACTCACAGGGCATTGCT
TGGGCCGTTAAGGATTTCATATTCGTCTTTACGCGCATTGTGAATGCCTG
GGTCATACTGAAGGGCTACGTGTATAATACTCCCGATGCTTTGAACAGAT
TAAGATGAGCTGCGTCGGGCTTTATGGCTTCCTTTGATTCTTGCAGATCC
TCAACCTGTCATCGTAAAGATGATTGTAAATCTTTGTAATCTGATGACTG
CTGAAGCGAAGAACGCTTTCGGGAAAGAATGTATCCATACAAGCATAGCA
TCTCTAAGGTTAGA
UFO11963.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtsh-RC | 2528 | CG7795-RC | 232..1261 | 84..1103 | 4840 | 98.7 | Plus |
| mtsh-RD | 2501 | CG7795-RD | 232..1261 | 84..1103 | 4840 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8318492..8318961 | 1080..616 | 2025 | 97.9 | Minus |
| 2L | 23513712 | 2L | 8319379..8319677 | 382..84 | 1495 | 100 | Minus |
| 2L | 23513712 | 2L | 8319076..8319312 | 617..381 | 1185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:50:02 has no hits.
UFO11963.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:10 Download gff for
UFO11963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtsh-RC | 212..1247 | 77..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:24 Download gff for
UFO11963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtsh-RD | 226..1261 | 77..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:01 Download gff for
UFO11963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtsh-RD | 226..1261 | 77..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:01 Download gff for
UFO11963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8318464..8318959 | 618..1103 | 97 | <- | Minus |
| 2L | 8319076..8319310 | 383..617 | 100 | <- | Minus |
| 2L | 8319379..8319683 | 77..382 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:24 Download gff for
UFO11963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8318464..8318959 | 618..1103 | 97 | <- | Minus |
| arm_2L | 8319076..8319310 | 383..617 | 100 | <- | Minus |
| arm_2L | 8319379..8319683 | 77..382 | 99 | | Minus |
