UFO11964.5prime Sequence
1106 bp (977 high quality bases) assembled on 2012-06-29
> UFO11964.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGCCCTGTCCGC
GCCCACCACATGTGGCTGCTCGCCTGTCCACTGGGCCATTGTCATTGTGC
TCCTGTCAGTGGCGATTGGACCGGGAGACGCCATGGCCCGTCCAGCGCGC
AACACGCAGTTGTTGTTCAGCGAGCTCTTGGGGGGCGGAAACGATGATAA
CAACTACTACGGCGACCAGTTGAAGTACCAGCAACAGCAACAGCAACAGC
AGGAACAGAAGCAGCAGCGGGTGCCGGCTTTCGCCAGGAAGTGGCCCTCG
CTGAGGGATCTGTTGCTCACCGTGGACTACGATGACTTCGGGGTTACCCA
GGAGAGCGAGGAGCAGGTGGCGCCCAGTTCCCGCCTGCTGGCTCGACTGC
ACAGGCTCGGCGATAATGGAGGCGGCGAGGAGCTGCGGTACAACGTCGTT
AACGAACTGACCAATATGCCCAGCAAGAAGGTGATGCCAGGACATCCCCT
CAAGGATCACAACACCAAGAAGAACGTTCAGTTTCGTAAACAATATATGT
CGCCTTGCCACTTCAAGATCTGCAACATGGGACGCAAACGCAACGCTGGC
TTCAATTCCTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCACACCAACATCCCGCTGATCTCA
TATGTGATCTACTCGCATGACTCACGTGTATACCACGACGCTGCCTGTAA
TGCTGGACGGGAAATGCTGCTACATGACCAGTGACAATCAACTAGAGATC
GACCTGATGACGATCGTCAGATTGCGAGAGACTACCTTCATCATCGAGAG
ATGTTCTAGACAGTTCAGCTCGAGATCTCACTAAATTAGAGAAAGCGCTT
TTCGTG
UFO11964.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CNMa-RB | 1261 | CG13936-RB | 604..1182 | 84..662 | 2895 | 100 | Plus |
| CNMa-RC | 1900 | CG13936-RC | 886..1464 | 84..662 | 2895 | 100 | Plus |
| CNMa-RD | 1606 | CG13936-RD | 604..1170 | 84..662 | 2705 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1851662..1851972 | 582..272 | 1555 | 100 | Minus |
| 3L | 28110227 | 3L | 1852052..1852240 | 272..84 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 1851351..1851418 | 662..595 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:50:05 has no hits.
UFO11964.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:11 Download gff for
UFO11964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13936-RC | 878..1469 | 77..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:26 Download gff for
UFO11964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13936-RC | 878..1469 | 77..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:02 Download gff for
UFO11964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CNMa-RC | 878..1469 | 77..667 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:02 Download gff for
UFO11964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1852052..1852249 | 76..272 | 98 | == | Minus |
| 3L | 1851664..1851971 | 273..580 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:26 Download gff for
UFO11964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1851664..1851971 | 273..580 | 100 | <- | Minus |
| arm_3L | 1852052..1852249 | 76..272 | 98 | == | Minus |
