UFO11966.5prime Sequence
1115 bp (949 high quality bases) assembled on 2012-06-29
> UFO11966.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGGTAATGGAGA
GGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACGATGATGTCA
CGGATGCAGACATCATATCCTGCGTGGAATTCAATCACGATGGCGAGCTG
CTGGCCACTGGTGACAAGGGCGGTCGCGTCGTCATCTTTCAGCGTGATCC
TGCCTCAAAAGCCGCCAATCCGCGACGCGGCGAATACAATGTCTATTCGA
CATTCCAATCGCACGAGCCCGAATTCGACTACCTCAAGTCCCTGGAGATT
GAGGAGAAGATAAACAAGATCCGGTGGCTGCAACAAAAGAATCCCGTGCA
CTTTCTGCTCTCGACCAACGACAAGACAGTCAAATTGTGGAAGGTCAGTG
AGCGTGACAAGTCGTTCGGCGGCTACAACACGAAGGAGGAGAACGGACTG
ATCCGGGATCCACAGAATGTAACGGCCCTCCGAGTGCCATCCGTGAAGCA
GATACCACTGCTGGTGGAGGCCTCCCCACGGCGCACCTTCGCCAATGCAC
ACACCTATCACATCAATTCAATAAGCGTTAATTCGGATCAGGAGACCTTC
TTGTCGGCCGACGACCTGCGGATCAATCTGTGGCACTTGGAGGTGGTCAA
CCAGAGCTACAACATTGTCGACATCAAGCCAACCAACATGGAGGAGCTAA
CAGAGGTGATCACCGCGGCCGAATTCCATCCGACCGAGTGCAATGTGTTT
GTCTACTCGAGCTCTAAGGGCACAATACGATTATGTGATATGCGTTCGGC
GGCGCTATGCGACCGGCACAGCAAACAGTTCGAGAGCCGAGATCCACGAT
CGCAGCTTTTCAGCGATATCAGTCACACGTGGAGTACACTCGTCCTATGT
CTCAGATATGCTCAGTGGATGATGACAGCATGACTTCGTAGAACTGCGCA
GTGTCCGCAAGTGCTCAATCAGGTGACGAGAGCAATACGACAAACTTCCG
TCACACGAAGTGACTAGCCGATCACGACGTACGATCGCAAAAGACGACAC
AATCGCTGCATCGGC
UFO11966.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tws-RH | 2300 | CG6235-RH | 464..1304 | 82..916 | 4040 | 99.2 | Plus |
| tws-RG | 2400 | CG6235-RG | 571..1411 | 82..916 | 4040 | 99.2 | Plus |
| tws-RC | 2242 | CG6235-RC | 406..1246 | 82..916 | 4040 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10128792..10129436 | 884..240 | 3210 | 99.8 | Minus |
| 3R | 32079331 | 3R | 10129495..10129647 | 242..90 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:50:08 has no hits.
UFO11966.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:11 Download gff for
UFO11966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RE | 480..1321 | 75..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:29 Download gff for
UFO11966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RC | 398..1239 | 75..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:04 Download gff for
UFO11966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RC | 398..1239 | 75..910 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:04 Download gff for
UFO11966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10128761..10129433 | 243..910 | 99 | <- | Minus |
| 3R | 10129495..10129646 | 91..242 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:29 Download gff for
UFO11966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5954483..5955155 | 243..910 | 99 | <- | Minus |
| arm_3R | 5955217..5955368 | 91..242 | 100 | <- | Minus |
