UFO11967.5prime Sequence
1085 bp (983 high quality bases) assembled on 2012-06-29
> UFO11967.5prime
CAGTCGACATGTCGCAGATCGGAGAACTGGGCAGTGGAGCCGGCAACGGC
GGCGGCGGCGGCGGATCCATCCGGGAGGCGGGCGGTTCATTTGGCAAAAT
GGAGGCTGCTCGCGAGGAGGAGTTCTTCTACAAGCAGCAAAAGGAGCAAC
TGAAGAACCTGAAGACCAAGACGGAGCCTAAGGCACCAGAGGCTCCCAAG
AAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
GAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAG
AAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCA
GGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAAT
AGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGA
AACTGCCGGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAACGTTTC
AGTTTGCTCATGGAAAACGGTGTACAAGGGTGAACACTATCCCATATCAC
CAGCTCACGTTCTTTCATGCCATACGAATTCCGGATGAGCATTCATCAGC
GGGCAAGATGTGAATAAAGGCCGGATAAAAACTTGTGCTTATTTTTTTCT
TTACGGTCCTTTAAAGGCCGTAATATCAGCCTGACGGTCTGTTATAAGGT
ACATTGAGCCAGTGACTGAAATGCTTCAATGTTCTTACGATGCAATGGAT
TATATCACGGGTGTATATTCAGGAATTTTTCTCCA
UFO11967.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34423-RB | 468 | CG34423-RB | 167..361 | 9..203 | 975 | 100 | Plus |
| CG34423-RA | 406 | CG34423-RA | 105..299 | 9..203 | 975 | 100 | Plus |
| CG13551-RB | 637 | CG13551-RB | 218..340 | 30..152 | 315 | 83.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23358843..23358971 | 9..137 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 23359028..23359097 | 134..203 | 350 | 100 | Plus |
| 2R | 25286936 | 2R | 23382618..23382722 | 134..30 | 270 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:50:11 has no hits.
UFO11967.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:12 Download gff for
UFO11967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34423-RB | 52..260 | 1..209 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:31 Download gff for
UFO11967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34423-RA | 96..304 | 1..209 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:05 Download gff for
UFO11967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34423-RA | 96..304 | 1..209 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:05 Download gff for
UFO11967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23358834..23358971 | 1..137 | 97 | -> | Plus |
| 2R | 23359032..23359097 | 138..203 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:31 Download gff for
UFO11967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19246357..19246494 | 1..137 | 97 | -> | Plus |
| arm_2R | 19246555..19246620 | 138..203 | 100 | == | Plus |
