UFO11968.5prime Sequence
1159 bp (1060 high quality bases) assembled on 2012-06-29
> UFO11968.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGAAGCACTCGCCGCTG
ATTGCCAGCGCTTGTCTGGCGCTGGTGTTGATGTCATCCAGCCTGATTGG
CAGCACCGAGGCCAGAAACAAGAAGAAGTACGTCGGCGAGACGGGCGGCG
ATTTCGAGTTTATCGATGAGATAAACAAAAACACGCAGAGCAACAAGAAT
CTGGGCGAGCACAAGCGCTGGATACACGATCCCTCGAGTGACCTTTGCCG
ACCGCTGAACTGCAAGAAGCGTGAAATCTGCCTGCTGGAGGACGAGTTCA
GTGCCGTTTGCGTGTCGAAGAAGGAGCTCCACAAGAATCGTGATGAGATA
ATCACCAAGGCCAAGTATTTGGAGGAGGAGGCCAAGCGGCGTGTCAACCA
GCAGGACAATCAGGACAGCCAGGACGCGGAGGATATCAACAACGACGACG
AGGATAACAGCAGCGATGGCGGCAGCAGCAACTCCAGCCCCACAGGCACC
AACAATGCCCAGGCCAGTGTCCAGGGAAATGAGGAGACCGACGACGAAGA
TAAGAGCCTAAGTCTGGGCGACGACGACGAGTCCAAGGAGGATGATGTCT
TCTACGAGAACAGTATCGCCGCCGGCGATAAGCAGCAGCAGCAACAGCAG
CTATCCCAGCCTGCTGCAGGACCTTCCGTTATTCAGCAGGACGACGACGA
GGAGTTGGACAACTGCAAGCCGTGTCCTGTGGCCAAGCCGACGTTCCTGT
GCGGAGCCGACAACAGGACCTACTCATCACTATGCAGATTGGATTATCAC
AATTGCATACATTCGACGTCCATACGGATCGCCTGCAAAGGATTCTGTCC
CTGCAAGGAGATTGTCGATGGAAAGCGGCTGCAGCGCATCTCGGGCTACA
ACACAAGTACAACAGAGATCAGCCTGACCAGCAGCAGCAGCAGCAGCACA
ACACACAGCAGCAGCAGCAGCAGCAGCTACAGACAGCAACACACACATCA
TGATGACAGCGCAACTATGGGCGTAACAACACGACTTCAACCGATCATGA
TGAACAAGAGGACATACCGCAAACACCACATCATGCCAGTAACTCAGTCG
AGAATCCAA
UFO11968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13830-RE | 2460 | CG13830-RE | 380..1440 | 77..1114 | 4705 | 97.5 | Plus |
| CG13830-RD | 4382 | CG13830-RD | 380..1440 | 77..1114 | 4705 | 97.5 | Plus |
| CG13830-RC | 2451 | CG13830-RC | 380..1440 | 77..1114 | 4705 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23081349..23081718 | 759..390 | 1850 | 100 | Minus |
| 3R | 32079331 | 3R | 23076828..23076976 | 908..760 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 23112203..23112345 | 224..82 | 700 | 99.3 | Minus |
| 3R | 32079331 | 3R | 23081828..23081930 | 390..288 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 23082095..23082167 | 291..219 | 365 | 100 | Minus |
| 3R | 32079331 | 3R | 23076092..23076215 | 1027..908 | 350 | 91.1 | Minus |
Blast to na_te.dros performed 2014-11-28 17:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2774..2956 | 945..1133 | 218 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6882 | 447..554 | 155 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2573..2850 | 458..723 | 154 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2467..2547 | 485..562 | 137 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6831 | 447..554 | 135 | 61.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 991..1058 | 681..748 | 133 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6959 | 447..574 | 129 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2525 | 447..636 | 122 | 53.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6768 | 504..554 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6789 | 483..554 | 117 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6810 | 485..554 | 116 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6844 | 447..555 | 115 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6881 | 447..571 | 115 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2373 | 659..701 | 113 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1584 | 652..710 | 111 | 67.2 | Plus |
UFO11968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:13 Download gff for
UFO11968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13830-RD | 365..1322 | 77..1026 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:32 Download gff for
UFO11968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13830-RC | 380..1337 | 77..1026 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:07 Download gff for
UFO11968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13830-RC | 380..1337 | 77..1026 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:07 Download gff for
UFO11968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23076828..23076976 | 760..908 | 100 | <- | Minus |
| 3R | 23076068..23076214 | 909..1045 | 91 | <- | Minus |
| 3R | 23081349..23081717 | 391..759 | 100 | <- | Minus |
| 3R | 23081828..23081930 | 288..390 | 100 | <- | Minus |
| 3R | 23082099..23082165 | 221..287 | 100 | <- | Minus |
| 3R | 23112207..23112351 | 77..220 | 99 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:32 Download gff for
UFO11968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18901790..18901936 | 909..1045 | 91 | <- | Minus |
| arm_3R | 18902550..18902698 | 760..908 | 100 | <- | Minus |
| arm_3R | 18907071..18907439 | 391..759 | 100 | <- | Minus |
| arm_3R | 18907550..18907652 | 288..390 | 100 | <- | Minus |
| arm_3R | 18907821..18907887 | 221..287 | 100 | <- | Minus |
| arm_3R | 18937929..18938073 | 77..220 | 99 | == | Minus |
