UFO11969.5prime Sequence
1170 bp (1079 high quality bases) assembled on 2012-06-29
> UFO11969.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGTGCCAAAAC
CAAAATGCCGCCAACTTCTTGAGCAATGGCAAGAAAATTGTGGGGGTGGC
TCTTAATTACATGGACGTTGTGCTGGCCAGGAACGTTCCCGTGCCCAAGG
AGCCGCTCGTCTTCCTCAAGCCCACATCTTCGTACCTCCAGGAGGGTCAG
CCCATTGTGTTACCAAAAGTCTTTACCAAGGTGGCATATGAAGTGGAACT
AGGCGTGGTGATTGGAAAGCCCTGCAAGAACGTATCCAAGGCAGATGCCA
TGAGCTATGTGGCAGGATACTGCCTGGCTTTGGATCTAACTGCCCAGTGC
AATTTGGGACCAGCTCGGGCGGCCGGTCATCCGTGGACCTTGGGCAAGGG
ATTTGATACTTCTACGCCCGTGTCCCAGTTTATACCCATCGAAAAAGTGA
CGGACCCGCACAACTTGCCGCTTTGGCTCACCGTCAATGGAGACCTTAAG
CAAAACGGGTGCACTGCAGACTTAATATTCAAGGTGCCCGACATCATTTC
CTACGTGTCCAAGTACATGACCCTGGAGGCCAACGATCTGATCCTTACCG
GAACGCCCAATGGTGCCGATGCGTTCAAGGCAGGCGATGTAATTCAGTGT
GGAATGGCCGATCTCGCTAAATTGACCTTCCAAGTGGAGGCTGAAGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCCTGCACTCAT
CGCAGTACTGTTGTATTCATTAGGCATTCTGCGACATGAAGCCATCACAA
ACGGCATGATGACTGATCGCAGCGGCATCAGCACTGTCGCTGGCGTATAA
TATTTGCCATGTGAACGGGGGCAGAGTGTCGATTGCAGTTTATCACTGGG
ACTCCAGAATGGCTGAACGA
UFO11969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5793-RB | 731 | CG5793-RB | 56..715 | 86..745 | 3285 | 99.8 | Plus |
| CG5793-RE | 1601 | CG5793-RE | 231..890 | 86..745 | 3285 | 99.8 | Plus |
| CG5793-RD | 788 | CG5793-RD | 113..772 | 86..745 | 3285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21128551..21128890 | 406..745 | 1700 | 100 | Plus |
| 3R | 32079331 | 3R | 21128346..21128494 | 259..407 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 21128121..21128217 | 163..259 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 21127978..21128055 | 86..163 | 375 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:50:19 has no hits.
UFO11969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:13 Download gff for
UFO11969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5793-RB | 51..718 | 77..749 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:34 Download gff for
UFO11969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5793-RD | 108..775 | 77..749 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:09 Download gff for
UFO11969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5793-RD | 108..775 | 77..749 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:09 Download gff for
UFO11969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21127973..21128054 | 77..162 | 94 | -> | Plus |
| 3R | 21128121..21128217 | 163..259 | 100 | -> | Plus |
| 3R | 21128347..21128493 | 260..406 | 100 | -> | Plus |
| 3R | 21128552..21128893 | 407..749 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:34 Download gff for
UFO11969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16953695..16953776 | 77..162 | 94 | -> | Plus |
| arm_3R | 16953843..16953939 | 163..259 | 100 | -> | Plus |
| arm_3R | 16954069..16954215 | 260..406 | 100 | -> | Plus |
| arm_3R | 16954274..16954615 | 407..749 | 99 | == | Plus |
