UFO11970.5prime Sequence
1104 bp (840 high quality bases) assembled on 2012-06-29
> UFO11970.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCAATCATACGC
TGTCTCCATCGAGGCCAACGCTTCGTGTCCAGCGTATTGCCATTGATTAC
TTTGATCGGAGATGTACGGGCCAAGTTTAGGACGCTGTACATTGGTGCCA
CCATCATCCAATGCAACAAGTTCATAGTCAAGCACCAAAAACAGTTCCTG
GACCGCACCATGGGTCAGATAACCTCCGCCAAGGAGCGCCAGGATCTCTT
CAAGCGCGTAATGGAGTTCGACATGGACAGAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTTGATTCATCCACAGAATCCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATA
TTTGCCCATGGTGAAAACGGGGCGAGAATTGCCATATTGGCCACGTTTAA
TCAAACTGTGAACTCACCCAGGATGGCTGAGACGAAAACATATCTCATAA
CCTTAGGAATAGCAGTTTCACGTACACGCACTCTGCGATAATGGAAAATG
CGAATCGCTGTATCCTCAACGTAACGTCGTGTCTGAACGGACAGTGACTA
CCTACCAGTCCGCTCTGCTCATCGAGCTCTAGGCAAGGATAAGCGAAATT
GGTATTCTCGCTAAAGCGAACATACGCGTAGATGCATGTGAGCCATGTTC
AGCTGATCCGGACGGTTCCTATCTACGAACATCACATACATACATGCTAG
TTCAGGATAGTAAAAAGTCCATCAGCGGGTCGCTAGTATATCTCCGCTAA
AAAA
UFO11970.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14057-RB | 521 | CG14057-RB | 194..439 | 86..331 | 1230 | 100 | Plus |
| CG14057-RA | 530 | CG14057-RA | 203..448 | 86..331 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17044483..17044660 | 331..154 | 890 | 100 | Minus |
| 3L | 28110227 | 3L | 17044713..17044781 | 154..86 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:49:50 has no hits.
UFO11970.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:08 Download gff for
UFO11970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14057-RA | 197..453 | 78..337 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:17 Download gff for
UFO11970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14057-RA | 196..452 | 78..337 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:55 Download gff for
UFO11970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14057-RA | 196..452 | 78..337 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:55 Download gff for
UFO11970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17044479..17044659 | 155..337 | 98 | <- | Minus |
| 3L | 17044713..17044788 | 78..154 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:17 Download gff for
UFO11970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17037579..17037759 | 155..337 | 98 | <- | Minus |
| arm_3L | 17037813..17037888 | 78..154 | 94 | | Minus |
