UFO11971.5prime Sequence
1186 bp (1086 high quality bases) assembled on 2012-06-29
> UFO11971.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGACCGAGGTGAAGATAC
CCAATCACATAATGCGCCTGAAGAGCGCCACTCTGGGCTGCCGTTACGCC
CTCGACGGGGAGTCCTTGTACTCGGTGAAGTGGTATAAGGACGGGCACGA
GATCTACCGCTATGTGCCACGCGATAAGCCCCCCGGACAGTCCTTCCCCC
TGCCCGGAGTCAACATCGATCTGCGTAACTCCTCGGACACCCAGATTCTC
CTGCGCCGCGTTACCCTCCAGAGTTCCGGACTTTATCGGTGCGAGGTGTC
CGGCGAGGCGCCCGCATTCAACACCGTATCCGAGTCGGAGACCATGACCG
TTGTGGTGACCCCCAACCACGGACCGAAAATAACAGGTGGCCAGCCGCGC
TACCAAATTGGAGACATCGTTCGGGTTAACTGCACCTCATCGCCGTCCAA
GCCCGTCTGTCACCTCAGTTGGCTAATAAATGGGGAACCGGTGCAAAAGA
CACACCTTCGGCAATACGACAAGGTGGTGGTGAATCGAGATGGGTTGGAG
ATGGCTCGCTTGGGGCTGGAGTTCCGGGTGAGGTCCTTCCACTTTAAGCA
CGGCGACATGAAGTTAAAGTGCGTGGCCAAGATCAGCTCACTGTATCTGC
AAAGCAACGAGGAGAGTGTGGAAAGCGATCGCCAGCATCGGGCCCCGGCA
TTGGAATCTCGGGAGACGGTAGCAGCCAAGTCCAGCACGATTGCTGCCGC
CTGTTCAAAACTGCCATCAAGCCTGATTGTCTCACTGCCTCCTGTTCTCC
TGCTGCTGCTGTTTCAAAATTGGAACTGGCCACGAATAGTGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATATCATAATC
ATATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAATTCCAGAATGGAGTTCTGAGGTCATACTGGATCTATCACAGGAGT
CCAAGCGAGCTCGTAATCCAATGCCCCCCGCCCTGCCCGTCATCGAGTAC
GGTGAGTCCACTAAGCATCCCTGGCGACTGAAGCCA
UFO11971.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIIa-RE | 4457 | CG12621-RE | 956..1760 | 82..886 | 4025 | 100 | Plus |
| beat-IIIa-RD | 1457 | CG12621-RD | 557..1361 | 82..886 | 4025 | 100 | Plus |
| CG34106-RB | 4457 | CG34106-RB | 956..1760 | 82..886 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17169813..17170076 | 406..669 | 1320 | 100 | Plus |
| 2L | 23513712 | 2L | 17158562..17158750 | 82..270 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 17161861..17161996 | 271..406 | 680 | 100 | Plus |
| 2L | 23513712 | 2L | 17170135..17170260 | 668..793 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 17170328..17170421 | 793..886 | 470 | 100 | Plus |
| 2L | 23513712 | 2L | 16990240..16990368 | 406..534 | 210 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:49:53 has no hits.
UFO11971.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:08 Download gff for
UFO11971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIa-RD | 211..1039 | 73..900 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:19 Download gff for
UFO11971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34106-RB | 947..1775 | 73..900 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:57 Download gff for
UFO11971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34106-RB | 947..1775 | 73..900 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:57 Download gff for
UFO11971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17170137..17170260 | 670..793 | 100 | -> | Plus |
| 2L | 17170329..17170436 | 794..900 | 95 | == | Plus |
| 2L | 17158553..17158750 | 73..270 | 97 | -> | Plus |
| 2L | 17161861..17161996 | 271..406 | 100 | -> | Plus |
| 2L | 17169814..17170076 | 407..669 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:19 Download gff for
UFO11971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17158553..17158750 | 73..270 | 97 | -> | Plus |
| arm_2L | 17161861..17161996 | 271..406 | 100 | -> | Plus |
| arm_2L | 17169814..17170076 | 407..669 | 100 | -> | Plus |
| arm_2L | 17170137..17170260 | 670..793 | 100 | -> | Plus |
| arm_2L | 17170329..17170436 | 794..900 | 95 | == | Plus |
