UFO11972.5prime Sequence
1023 bp (921 high quality bases) assembled on 2012-06-29
> UFO11972.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGATATGGATTTGA
ATAACGACTTGGAGAAACGCATTTCGGATGCCTTTTGTGTGTTCGATCAT
CATGGCGACAAGTTCATCGACGTTAGAGAAGTGGGCACTGTGCTGAGACT
CCTGGGCTGTGTTCCCACCGAGGAGGAGGTGAACGAAGTAATTTCGGCTA
CAGAATCGGAGGAGACCAGTGGCGAAGTGCATTTGACTAAATTTTTGCCA
CACGTCTCGCAACTGCTCATGGAAAGAAAAATGGAGCCTGCTCCGCCAGA
GAAAATTCTCCAGGCCTTTAAGATCTTGGATCCGGAGAACAAGGGCTATC
TCACCAAGGAGAGCTTTGGCAAACTGATGATGGAGGAGGGCGAGCCTTTC
ACCCAAGAGGAAATGGACGAAATGTGGCCAGTGGCCATAGACCCAATTAG
CGGACACATACCCTATGAGTTCTACCTGAATCAGCTCATGGTCTATCTGG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTATTCATAGCATCTGCGCTGAAGCATCACAA
CGCTGTGACTGATCGCACGCTCACACTGCGCTGTAATATTGCAGTGAACG
GGCAATGCATGCCGTATCAATGGATCCAGTGTACAAATCAACTAGATGAT
CGACGATGATGATCACGCCATATTCGCGAGTCACCTCACGCGAGGTTCAC
GTCATTAGTCAATCGACGTGTGG
UFO11972.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11041-RB | 537 | CG11041-RB | 28..494 | 83..549 | 2335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20146214..20146445 | 98..329 | 1160 | 100 | Plus |
| 2R | 25286936 | 2R | 20146501..20146713 | 330..542 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:49:56 has no hits.
UFO11972.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:09 Download gff for
UFO11972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11041-RB | 13..483 | 83..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:21 Download gff for
UFO11972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11041-RB | 28..498 | 83..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:58 Download gff for
UFO11972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11041-RB | 28..498 | 83..554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:58 Download gff for
UFO11972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20146214..20146445 | 98..329 | 100 | -> | Plus |
| 2R | 20146501..20146716 | 330..546 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:21 Download gff for
UFO11972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16033719..16033950 | 98..329 | 100 | -> | Plus |
| arm_2R | 16034006..16034221 | 330..546 | 99 | == | Plus |
